List of Database Records  (records : )

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Database maintenance site: European Bioinformatics Institute (EMBL-EBI), National Center for Biotechnology Information (NCBI), Bioinformation and DDBJ Center, National Institute of Genetics, Research Organization of Information and Systems
Organism(s) covered: All
Description: It is a portal site for the INSDC(International Nucleotide Sequence Database Collaboration), which is an initiative operated between DDBJ, EMBL-EBI and NCBI. Each organization ... Show Details...
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Database maintenance site: European Bioinformatics Institute (EMBL-EBI), National Center for Biotechnology Information (NCBI)
Organism(s) covered: Homo sapiens
Description: LRG is a database of stable genomic, transcript and protein reference sequences for reporting clinically relevant sequence variants. NCBI (RefSeq) and EMBL-EBI (Ensembl/GENCODE)... Show Details...
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Database maintenance site: Bioinformation and DDBJ Center, National Institute of Genetics, Research Organization of Information and Systems
Organism(s) covered: All
Description: DDBJ BioSample is a database to store descriptive information about biological samples used to generate experimental data. The data are shared among DDBJ, EBI and NCBI BioSample... Show Details...
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Database maintenance site: The International Council for Harmonisation of Technical Requirements for Pharmaceuticals for Human Use (ICH)
Organism(s) covered:
Description: MedDRA is a standardized medical terminology for regulatory information of medical products. It is available for use in the registration, documentation and safety monitoring of ... Show Details...
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Database maintenance site: Monarch Initiative
Organism(s) covered: Homo sapiens
Description: Mondo is an ontology for integrating disease definitions. It collects disease definitions and data models from numerous sources, which include HPO, OMIM, SNOMED CT, ICD, PhenoDB... Show Details...
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Database maintenance site: McDonnell Genome Institute, Washington University School of Medicine
Organism(s) covered: Homo sapiens
Description: DGIdb is a database about drug-gene interactions and the druggable genome. It collects and integrates drug-gene interactions and gene druggability information from papers, datab... Show Details...
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Database maintenance site: Genome Aggregation Database Consortium
Organism(s) covered: Homo sapiens
Description: GnomAD is a resource for exome and genome sequencing data from a wide variety of large-scale sequencing projects. It contains following datasets; The v2 data set (GRCh37/hg19) p... Show Details...
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Database maintenance site: National Center for Biotechnology Information (NCBI)
Organism(s) covered: Homo sapiens
Description: MedGen is a portal database about conditions and phenotypes related to Medical Genetics. It aggregates terms from the NIH Genetic Testing Registry (GTR), UMLS, HPO, Orphanet, Cl... Show Details...
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Database maintenance site: The Jackson Laboratory
Organism(s) covered: Homo sapiens
Description: The Human Phenotype Ontology (HPO) provides a standardized vocabulary of phenotype specialized in human disease. The medical literatures, Orphanet, DECIPHER, and OMIM are used f... Show Details...
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Database maintenance site: The McDonnell Genome Institute, Washington University School of Medicine
Organism(s) covered: Homo sapiens
Description: CIViC is a knowledgebase for Clinical Interpretation of Variants in Cancer. It has collected knowledge of the therapeutic, prognostic, diagnostic and predisposing relevance of i... Show Details...
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Database maintenance site: World Health Organization
Organism(s) covered: Homo sapiens
Description: This is a website for ICD (International Statistical Classification of Diseases and Related Health Problems) -11, which is an organized collection of global standard terms for h... Show Details...
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Database maintenance site: EMBL-EBI
Organism(s) covered:
Description: ChEMBL is a database for bioactive molecules. It collects information of small molecules, such as calculated properties (e.g. logP, Molecular Weight, Lipinski Parameters, etc.) ... Show Details...
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Database maintenance site: Cornell University
Organism(s) covered: Homo sapiens | Arabidopsis thaliana | Caenorhabditis elegans | Drosophila melanogaster | Drosophila melanogaster | ...
Description: INstruct is a database of protein interactome networks in human and six model organisms. In this site, protein-protein interaction interfaces have been identified based on struc... Show Details...
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Database maintenance site: Cornell University
Organism(s) covered: Homo sapiens | Saccharomyces cerevisiae | Schizosaccharomyces pombe | cDrosophila melanogaster | Caenorhabditis elegans | ...
Description: HINT (High-quality INTeractomes) is a database of high-quality protein-protein interactions. The interactions are collected from 8 interactome resources (BioGRID, MINT, iRefWeb,... Show Details...
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Database maintenance site: National Institute of Health Sciences
Organism(s) covered: Entoloma rhodopolium | Omphalotus guepiniformis | Colchicum autumnale | Narcissus | Veratrum | ...
Description: MushPlant database is a database about toxic plants and mushrooms. It contains statistical data of food poisoning cases caused by toxic plants and mushrooms between 2000 and 201... Show Details...
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Database maintenance site: Broad Institute, Inc., UC San Diego
Organism(s) covered: Homo sapiens
Description: MSigDB is a collection of annotated gene sets for use with Enrichment Analysis (GSEA) software which is a computational method that determines whether an a priori defined set of... Show Details...
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Database maintenance site: Icahn School of Medicine at Mount Sinai
Organism(s) covered: Homo sapiens | Mus musculus
Description: CREEDS is a knowledgebase for associations between drugs, genes and diseases based on the data from a crowdsourcing microtask project implemented to annotate and reanalyze gene ... Show Details...
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Database maintenance site: National Agriculture and Food Research Organization
Organism(s) covered: Citrus unshiu | Citrus trifoliata | Citrus clementina | Citrus sinensis | Citrus maxima | ...
Description: Mikan Genome Database (MiGD) is an integrated database for mandarin molecular breeding. It provides the following contents: (1) comparative genome browser which shows genome-wid... Show Details...
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Database maintenance site: RIKEN
Organism(s) covered: Homo sapiens
Description: AMED Cardiotoxicity Database is a database about small molecules which bind to various ion channels and potentially cause cardiotoxic risk.It compiles cardiotoxicity-related inf... Show Details...
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Database maintenance site: Development of a Drug Discovery Informatics System
Organism(s) covered: Homo sapiens | Rattus norvegicus
Description: Development of a Drug Discovery Informatics System is a portal site containing databases and tools for predicting pharmacokinetics and toxicity (cardiotoxicity / hepatotoxicity)... Show Details...
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Database maintenance site: Institute of Biophysics, Chinese Academy of Sciences
Organism(s) covered: Homo sapiens | Mus musculus | Rattus norvegicus | Drosophila melanogaster | Caenorhabditis elegans | ...
Description: piRBase stores information on piRNAs and piRNA-associated data to support piRNA functional analysis. Show Details...
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Database maintenance site: EMBL-EBI, The Jackson Laboratory
Organism(s) covered: Mus musculus | Homo sapiens
Description: PDX Finder is an open repository for the upload and storage of clinical, genomic and functional Patient-Derived Xenograph (PDX) data which provides a comprehensive global catalo... Show Details...
Database maintenance site: BIG Data Center, Beijing Institute of Genomics, Chinese Academy of Sciences
Organism(s) covered: Homo sapiens
Description: LncBook is a curated knowledgebase of human lncRNAs that features a comprehensive collection of human lncRNAs and systematic curation of lncRNAs by multi-omics data integration,... Show Details...
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Database maintenance site: Beijing Proteome Research Center (BPRC)
Organism(s) covered: AII
Description: iProX is a public platform for collecting and sharing raw data, analysis results and metadata obtained from proteomics experiments. The iProX repository employs a web-based prot... Show Details...
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Database maintenance site: Fudan University
Organism(s) covered:
Description: PreMedKB is a database for integrating information on diseases, genes, variants, drugs, and the relationships between any two or more of these four components. This database con... Show Details...
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Database maintenance site: La Trobe Institute for Molecular Sciences
Organism(s) covered: All
Description: Vesiclepedia is a manually curated compendium of molecular data (lipid, RNA and protein) identified in Extracellular vesicles. The Extracellular vesicles are classified into fol... Show Details...
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Database maintenance site: University of Melbourne
Organism(s) covered: Homo sapiens | Mus musculus
Description: Stemformatics is a web-based data platform to find interesting genes in gene expression datasets of stem cells. It contains public gene expression datasets derived from microarr... Show Details...
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Database maintenance site: ICube, Université de Strasbourg
Organism(s) covered: Eukaryota | Archaea | Bacteria
Description: OrthoInspector is a catalog of orthologs predicted across three domains of life, Eukaryota, Bacteria, and Archaea. Each entry provides a fully searchable list of orthologs and i... Show Details...
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Database maintenance site: TAGC, Inserm U1090
Organism(s) covered: Homo sapiens | Mus musculus | Drosophila melanogaster | Caenorhabditis elegans | Saccharomyces cerevisiae
Description: MoonDB is a database of predicted and manually curated extreme multifunctional (EMF) proteins and moonlighting proteins, which are proteins that perform multiple unrelated funct... Show Details...
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Database maintenance site: College of Bioinformatics Science and Technology, Harbin Medical University
Organism(s) covered: all
Description: LncACTdb is a database for LncRNA-Associated Competing Triplets (LncACT). It provides manually curated and predicted ceRNA interactions. The class of ceRNAs in LncACTdb contains... Show Details...
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Database maintenance site: Network Biomedicine Lab, Yonsei University, Marcotte Lab, University of Texas at Austin
Organism(s) covered: Homo sapiens
Description: HumanNet is a database for human gene networks, which integrates diverse types of omics data and provides gene-disease associations by their own network inference algorithms. Us... Show Details...
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Database maintenance site: The Walter and Eliza Hall Institute of Medical Research
Organism(s) covered: Homo sapiens | Mus musculus
Description: Haemosphere is a data portal for RNA-Seq datasets, including each celltype of the dataset, cell_lineage, tissue, treatment, immunophenotype, species, and strain, etc. It contain... Show Details...
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Database maintenance site: EMBL Heidelberg
Organism(s) covered: Homo sapiens | Mus musculus
Description: GENCODE is a database to identify and classify all gene features in the human and mouse genomes. It provides foundational reference genome annotation, and includes comprehensive... Show Details...
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Database maintenance site: University of Washington
Organism(s) covered: Homo sapiens
Description: It is a site for Combined Annotation-Dependent Depletion (CADD), which is a framework for scoring the deleteriousness of single nucleotide variants as well as insertion/deletion... Show Details...
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Database maintenance site: Weizmann Institute of Science
Organism(s) covered: Saccharomyces cerevisiae
Description: YeastRGB is a database for abundance and localization of proteins in Saccharomyces cerevisiae. It provides fluorescence microscopy data of yeasts, which were introduced ORF libr... Show Details...
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Database maintenance site: Luxembourg Centre for Systems Biomedicine (LCSB) of the University of Luxembourg
Organism(s) covered: Homo sapiens | Bacteria
Description: VMH is an integrated database for human and gut microbial metabolisms linked to diseases and nutritional data. The core data are hundreds of genome-scale metabolic reconstructio... Show Details...
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Database maintenance site: University of Michigan Medical School
Organism(s) covered: Bacteria | Viruses | Parasitus | Fungi
Description: Victors is a database about virulence factors (VFs) collected by manual curation from peer-reviewed publications. Those VFs come from pathogenic organisms showed pathogenicity t... Show Details...
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Database maintenance site: UniLectin
Organism(s) covered: All
Description: UniLectin is a database for manually curated and predicted lectins. It provides information about the classification and curation of lectins (with UniLectin3D module), the predi... Show Details...
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Database maintenance site: Riken BioResource Research Center
Organism(s) covered: Mus musculus
Description: MoG+ is a mouse genome database which shows mouse genomic variation visually to compare inbred mouse strains established in Japan (JF1/Ms etc.) to frequently used classical inbr... Show Details...
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Database maintenance site: RIKEN
Organism(s) covered: All
Description: BioResource MetaDatabase is a data repository for metadata of bioresources in RIKEN. This database provides life-science data in the bases of standardized metadata techniques in... Show Details...
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Database maintenance site: University College Cork
Organism(s) covered: Caenorhabditis elegans | Drosophila melanogaster | Escherichia coli | Homo sapiens | Mus musculus | ...
Description: Trips-viz is a database for Ribosome profiling (Ribo-seq) data that have been produced using publicly available ribosome profiling and corresponding RNA-seq datasets from SRA.Tr... Show Details...
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Database maintenance site: Beijing University of Chinese Medicine
Organism(s) covered: Homo sapiens
Description: SymMap is a database for integration with traditional Chinese medicine (TCM) and modern medicine (MM) through both internal molecular mechanism and external symptom mapping. It ... Show Details...
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Database maintenance site: Agricultural Genetic Engineering Research Institute
Organism(s) covered: All
Description: SSRome is an integrated database and pipelines for exploring microsatellites in a wide range of organisms. It contains microsatellite DNA motifs which were identified across Pla... Show Details...
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Database maintenance site: Harbin Medical University
Organism(s) covered: Homo sapiens
Description: SEdb is a database about super-enhancers in gene regulation. It collects detailed genetic and epigenetic annotation information on super-enhancers, including common SNPs, motif ... Show Details...
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Database maintenance site: Centre for Genomic Regulation (CRG)
Organism(s) covered: Homo sapiens | Mus musculus | Saccharomycotina
Description: RNAct is a database of the protein–RNA interactome. RNA-binding proteins (RBPs) are collected from experimental interaction data or predicted from SONAR and catRAPID (protein–RN... Show Details...
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Database maintenance site: INRA
Organism(s) covered: All
Description: RetroRules is a database of reaction rules for metabolic pathway. It provides a complete set of reaction rules, which were extracted from public databases and expressed in the c... Show Details...
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Database maintenance site: Sun Yat-sen University Cancer Center
Organism(s) covered: Homo sapiens
Description: qPhos is a database for comprehensive resource of protein phosphorylation in human tissues and cell lines. The data were curated from published literatures to provide protein ph... Show Details...
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Database maintenance site: Institut de Biotecnologia i de Biomedicina, Universitat Autònoma de Barcelona
Organism(s) covered: Homo sapiens
Description: PopHumanScan is a catalog about thousands of regions of the human genome showing evidences of selection along the human lineage. This database retrieved the population genomic d... Show Details...
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Database maintenance site: Saarland University
Organism(s) covered: Bacteria
Description: PLSDB is a database about bacterial plasmids retrieved from the NCBI nucleotide database. Users can select plasmids by various parameters such as the sequence length, topology, ... Show Details...
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Database maintenance site: Faculdade de Medicina, Universidade de Lisboa
Organism(s) covered: All
Description: pATLAS is a database for searching plasmids with tools to visualize relationships between plasmids. Users can search plasmids by the name, taxa, antibiotic resistance and virule... Show Details...