List of Database Records  (records : )

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Database maintenance site: Geneva Antibody Facility
Organism(s) covered: All
Description: The ABCD database is a repository of sequenced antibodies, integrating curated information about the antibody and its antigen with cross-links to standardized databases of chemi... Show Details...
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Database maintenance site: National Museum of Nature and Science
Organism(s) covered: Tracheophyta | Ascomycota
Description: Flora of Myanmar Database is a database about flora specimens collected in Myanmar (Burma). It contains the records of specimens deposited in herbaria of National Museum of Natu... Show Details...
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Database maintenance site: RIKEN, Center for Sustainable Resource Science
Organism(s) covered: Sorghum bicolor
Description: MOROKOSHI Sorghum transcriptome database provides transcriptomic data in Sorghum bicolor. It contains information of ESTs from a normalized full-length cDNAs library of five gro... Show Details...
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Database maintenance site: Faculty of Science, Ochanomizu University, Faculty of Science and Engineering, Waseda University
Organism(s) covered: All
Description: BioHiKR is a database for bioluminescence. Each entry contains information of organism, protein, habitat, wave and ligand, which data links to Wikipedia and Uniprot and/or PDBj. Show Details...
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Database maintenance site: The Isambert Lab, Institute Curie
Organism(s) covered: Vertebrata | Oryzias latipes | Tetraodon nigroviridis |
Gasterosteus aculeatus
| Danio rerio | ...
Description: OHNOLOGS is a repository of genes retained from whole genome duplications in the Vertebrate genomes. It contains ohnolog pairs and families in various vertebrate genomes compute... Show Details...
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Database maintenance site: CSIR-Centre for Cellular & Molecular Biology (CCMB)
Organism(s) covered: All
Description: MSDB is a database of simple sequence repeats (SSRs), also known as microsatellites. Each entry contains chromosome No., repeat class, repeat length, related gene name, annotati... Show Details...
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Database maintenance site: Koch Institute for Integrative Cancer Research at MIT, University of Illinois at Chicago
Organism(s) covered: Homo sapiens | Mus musculus
Description: MatrisomeDB is a database of proteomic data for extracellular matrix (ECM). It provides hierarchically-clustered tissue distribution heatmap of proteins with confidence score, a... Show Details...
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Database maintenance site: Johns Hopkins School of Medicine
Organism(s) covered: Homo sapiens | Mus musculus | Drosophila melanogaster | Caenorhabditis elegans | Danio rerio | ...
Description: EnhancerAtlas is a database providing enhancer annotation in nine species including human (hg19), mouse (mm9), fly (dm3), worm (ce10), zebrafish (danRer10), rat (rn5), yeast (sa... Show Details...
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Database maintenance site: University of Southern California
Organism(s) covered: All
Description: DNAproDB is a database for DNA-protein complexes. The site consists of a database, structure processing pipeline and web-based visualization tool. The database contains structur... Show Details...
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Database maintenance site: University of Texas Health Science Center at Houston (UTHealth)
Organism(s) covered: Hepatitis B virus | Human papillomavirus | Human gammaherpesvirus 4 | Adeno-associated virus - 2 | Human immunodeficiency virus | ...
Description: VISDB is a knowledgebase of site-related information about viruses integrated into human genome. It covers 9 main viruses, including 5 DNA oncoviruses (HBV, HPV, EBV, MCV, AAV2)... Show Details...
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Database maintenance site: Faculty of Engineering, Bar Ilan University, nstitute of Structural and Molecular Biology, Birkbeck College
Organism(s) covered: Homo sapiens | Macaca mulatta | Macaca fascicularis |
Description: VDJbase is a database of adaptive immune receptor genes, genotypes and haplotypes. In this database, collections are inferred from immune receptor repertoire sequences, and also... Show Details...
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Database maintenance site: College of Pharmaceutical Sciences, Zhejiang University
Organism(s) covered: Homo sapiens | Rattus | Mus musculus | Canis lupus familiaris | Danio rerio | ...
Description: VARIDT is a database for drug transporters (DTs) confirmed by their corresponding drugs, which covers the comprehensive sets of DT variability data, and allows the interplay ana... Show Details...
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Database maintenance site: Material Management Center, Kyushu University
Organism(s) covered: All
Description: MMC is a database of tangible research materials (Materials) which are created or acquired through research activities. This database contains information about materials such a... Show Details...
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Database maintenance site: Pharmaceutical and Medical Device Regulatory Science Society of Japan
Organism(s) covered:
Description: MedDRA/J is a Japanese version of MedDRA (http://www.meddra.org) which is a pragmatic, medically valid terminology with an emphasis on ease of use for data entry, retrieval, ana... Show Details...
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Database maintenance site: University of Texas Health Science Center at Houston
Organism(s) covered: Homo sapiens
Description: TSEA-DB is a database for trait-associated tissue specificity. This database contains trait collection decoded with tissue-specific enrichment analysis (TSEA) and their related ... Show Details...
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Database maintenance site: Helmholz-Zentrum for Environmental Research
Organism(s) covered: terrestrial metagenome | Bacteria
Description: TerrestrialMetagenomeDB is a repository of curated metadata for terrestrial metagenomes. Data are collected from MG-RAST and the Sequence Read Archive (SRA), the two main metage... Show Details...
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Database maintenance site: Faculty of Biology, Adam Mickiewicz University
Organism(s) covered: Primates
Description: SyntDB is a database about human long non-coding RNAs conserved across primates. Each record contains Ensembl ID, reference alias, lncRNA, biotype of reference transcript, isofo... Show Details...
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Database maintenance site: College of informatics, HZAU
Organism(s) covered: Homo sapiens
Description: SNP2APA is a database for exploring the effects of single nucleotide polymorphisms (SNPs) on alternative polyadenylation (APA). SNP2APA allows users to : Browse or search cis-ap... Show Details...
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Database maintenance site: Department of Biochemistry, University of Sherbrooke
Organism(s) covered: Homo sapiens
Description: snoDB is a database of human snoRNA, which data are collected from other established databases, publications and experimental data generated by the group. Each entry contains in... Show Details...
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Database maintenance site: Kobe University
Organism(s) covered: Cornaceae | Alseuosmiaceae | Argophyllaceae | Asteraceae | Calyceraceae | ...
Description: This is a database for all members in whole of Asterales. It includes taxon name, chromosome number (n and 2n), DNA contents, genbank accession numbers (for the nuclear or chlor... Show Details...
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Database maintenance site: National Institute of Advanced Industrial Science and Technology (AIST)
Organism(s) covered: Homo sapiens
Description: mFAERS is a search system about side effects reported in the FDA Adverse Event Reporting System (FAERS) public data. It provides information on intractable diseases designated b... Show Details...
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Database maintenance site: National Institute of Advanced Industrial Science and Technology
Organism(s) covered: Severe acute respiratory syndrome coronavirus 2
Description: SARS-CoV2-COV2-NMR DB is a 2D NMR spectra database about SARS-CoV-2 proteins. It retains 2D NMR spectra of 22 structural domains, including 3 non-canonical sequences, which ensu... Show Details...
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Database maintenance site: Pathogen Genomics Center, National Institute of Infectious Diseases
Organism(s) covered: Bacilli | Betaproteobacteria | Clostridia | Epsilonproteobacteria | Gammaproteobacteria | ...
Description: gGENEPID is an integrated database for pathogen genome and epidemiological investigation. It contains genome information about 35 pathogens stipulated in the Infectious Diseases... Show Details...
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Database maintenance site: ZMNH Institute of Medical Systems Biology
Organism(s) covered: Homo sapiens | Bos taurus | Mus musculus | Rattus norvegicus | Caenorhabditis elegans | ...
Description: SEA is a database for the expression of small RNA (miRNA, piRNA, snoRNA, snRNA, siRNA) and pathogens. It contains sRNA expression information from re-analyzed published samples,... Show Details...
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Database maintenance site: Research Center of Basic Medical Sciences, Tianjin Medical University
Organism(s) covered: Homo sapiens
Description: QTLbase is a database about genome-wide QTL summary statistics for many human molecular traits across over 70 tissue/cell types. It contains associations between genotypes and m... Show Details...
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Database maintenance site: Beijing Agro-Biotechnology Research Center, BAAFS
Organism(s) covered: Chlorophyta | Embryophyta
Description: PmiREN is a comprehensive database for functional plant miRNA in about 180 species phylogenetically ranging from chlorophytes to angiosperms. Each record contains information ab... Show Details...
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Database maintenance site: Shanghai Children's Hospital, Shanghai Jiao Tong University
Organism(s) covered: Homo sapiens
Description: PhenoModifier is a database about genetic modifiers for elucidating the genetic basis of human phenotypic variation. It contains human genetic modifiers information, which manua... Show Details...
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Database maintenance site:
Organism(s) covered: Equus caballus | Homo sapiens | Mus musculus | Rattus | Canis lupus familiaris | ...
Description: It is a database for non-B DNAs which do not fall into a right-handed Watson-Crick double-helix. This database provides information of genomic regions predicted to form non-B DN... Show Details...
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Database maintenance site: National Institute of Health Sciences
Organism(s) covered:
Description: It provides information of allergenic proteins and low-molecular weight allergenic compounds. The allergenic proteins have been collected from literature sources and AllergenOnl... Show Details...
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Database maintenance site: Department of Biochemistry, Eötvös Loránd University
Organism(s) covered: Homo sapiens | Eukaryota | Drosophila melanogaster | Saccharomyces cerevisiae | Caenorhabditis elegans | ...
Description: PhaSePro is a database of proteins driving LLPS (liquid-liquid phase separation) in cells. For each of them, this database mainly provides the protein information, the coding ge... Show Details...
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Database maintenance site: Peking University
Organism(s) covered: Homo sapiens | Metazoa | Dictyostelium discoideum | Tetrahymena thermophila | Trypanosoma brucei brucei | ...
Description: PhaSepDB is a database of proteins related to phase separation (PS) and Membraneless organelles (MLOs) . This database mainly contains the protein names, links to Uniprot, codin... Show Details...
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Database maintenance site: University of Toyama Institute of Natural Medicine
Organism(s) covered: Viridiplantae
Description: KampoDB is an integrated database for natural medicines such as herbal medicines. It provides information of kampo formulas, including crude drugs, constituent natural compounds... Show Details...
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Database maintenance site: EMBL-EBI
Organism(s) covered: Arabidopsis thaliana | Caenorhabditis elegans | Candida albicans | Danio rerio | Dictyostelium discoideum | ...
Description: AlphaFold DB is a database for protein structure predictions for human and 20 other key organisms. Each entry contains basic information about the protein and three separate out... Show Details...
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Database maintenance site: Graduate School of Integrated Sciences for Life, Hiroshima University
Organism(s) covered: Bacteria
Description: It is a set of 16S RNA sequences for metagenomic analysis using kraken2. Sequences with taxonomy ID, accession No. and definition are provided in fasta format. Show Details...
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Database maintenance site: China National Center for Bioinformation / Beijing Institute of Genomics, Chinese
Organism(s) covered: Bacteria | Archaea
Description: PADS Arsenal is a database of genes associated with 18 categories of prokaryotic antiviral defense systems. This database mainly contains Assembly accessions, the number of gene... Show Details...
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Database maintenance site: Lécuyer Lab, Institut de Recherches Cliniques de Montéral
Organism(s) covered: Homo sapiens | Caenorhabditis elegans | Danio rerio | Drosophila melanogaster | Mus musculus
Description: oRNAment is a database of putative RBP (RNA-binding-protein) binding site instances in coding and non-coding RNA in five species. For each RBP, this database mainly provides an ... Show Details...
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Database maintenance site: Institute of Structural and Molecular Biology, Birkbeck College
Organism(s) covered: Homo sapiens
Description: OGRDB is a database of the repertoires of human germline receptor alleles. Each data is submitted by researchers and reviewed and accepted by IARC (International Agency for Rese... Show Details...
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Database maintenance site: Huazhong Agricultural University, College of Informatics
Organism(s) covered: Homo sapiens
Description: ncRNA-eQTL is a database of SNPs influencing ncRNA (non-coding RNA) expression. It provides information of ncRNA-related eQTLs (Expression quantitative trait locus) across 33 ca... Show Details...
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Database maintenance site: RIKEN
Organism(s) covered: Homo sapiens
Description: ChemProteoBase is a database about proteomic profiling of cells treated with chemical drugs based on 2D-DIGE. Each entry contains protein name, position (x, y), Mascot Score, Un... Show Details...
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Database maintenance site: Nara Institute of Science and Technology
Organism(s) covered: Homo sapiens
Description: KNApSAcK Biomarker is a database for human biomarkers that provide indication of diseases. The biomarker information, which are biomarker name, related diseases, marker type (me... Show Details...
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Database maintenance site: Hiroshima University Faculty of Pharmaceutical Sciences
Organism(s) covered: Homo sapiens
Description: Phos-tag SDS-PAGE database is a collection about Phos-tag (a novel phosphate-binding tag) SDS-PAGE images for analyzing phosphorylated proteins. Each entry contains SDS-PAGE ima... Show Details...
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Database maintenance site: Japan Newt Research Community
Organism(s) covered: Cynops pyrrhogaster
Description: IMORI is a database of sequence resources about the Japanese fire bellied newt. It contains sequences from transcriptome data in various stages, such as development, regeneratio... Show Details...
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Database maintenance site: Osaka Prefecture University
Organism(s) covered: Ephemeroptera | Odonata | Plecoptera | Hemiptera | Megaloptera | ...
Description: J-amir is a collection of digital data about aquatic macroinvertebrates inhabiting Japan. It contains photo-images and analyzed DNA sequences (partial coding regions of 18S rRNA... Show Details...
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Database maintenance site:
Organism(s) covered: Homo sapiens
Description: ADMIX database is an integrated database about Alzheimer's disease multi-omics data. It contains publicly available data in genomics, epigenomics, transcriptomics and proteomics... Show Details...
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Database maintenance site: Research Organization of Information and Systems Database Center for Life Science
Organism(s) covered: Homo sapiens
Description: NanbyoData provides informative data related to intractable diseases using Nanbyo Disease Ontology (NANDO). Designated intractable diseases and chronic specific pediatric diseas... Show Details...
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Database maintenance site: LINK-Group
Organism(s) covered: Homo sapiens
Description: Translocatome is a database that collects and characterises manually curated and predicted translocating proteins from human cells. The prediction is made by a gradient boosting... Show Details...
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Database maintenance site: College of Life Science and Technology, Huazhong Agricultural University
Organism(s) covered: Bos taurus | Caenorhabditis | Danio rerio | Drosophila | Equus caballus | ...
Description: Many animal species present sex differences. Sex-associated genes (SAGs), which have female-biased or male-biased expression, have major influences on the remarkable sex differe... Show Details...
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Database maintenance site: EMBL-EBI
Organism(s) covered: All
Description: Genome properties is an annotation system whereby functional attributes can be assigned to a genome, based on the presence of a defined set of protein signatures within that gen... Show Details...
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Database maintenance site: Boyce Thompson Institute (BTI), Cornell University
Organism(s) covered: Cucurbitaceae
Description: The recent genome sequence assemblies of major cucurbit crop species, including cucumber, melon, watermelon and pumpkin have made it feasible to use advanced genomic approaches ... Show Details...
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Database maintenance site: Bioinformatics Institute (BII), A*STAR
Organism(s) covered: All
Description: The AlloMAPS database provides data on the energetics of communication in proteins with well-documented allosteric regulation, allosteric signalling in PDBselect chains, and all... Show Details...