List of Database Records  (records : )

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Database maintenance site: J. Craig Venter Institute, Texas Advanced Computing Center, The University of Texas at Austin, University of Cambridge
Organism(s) covered: Arabidopsis thaliana
Description: Araport is an open-access online community resource for Arabidopsis research. It hosts the Araport11, updated Arabidopsis genome annotation from TAIR10. Araport offers two core ... Show Details...
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Database maintenance site: Tokyo Women's Medical University
Organism(s) covered: Caenorhabditis elegans
Description: NBRP C. elegans is a National Bioresource Project for the experimental animal "Nematode C. elegans". Tokyo Women's Medical University is the core facility to collect, store and ... Show Details...
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Database maintenance site: Tohoku University Graduate School of Information Sciences
Organism(s) covered:
Description: NLDB is a database of automatically collected and predicted 3D protein-ligand interactions in the enzymatic reactions of metabolic pathways registered in KEGG. NLDB provides th... Show Details...
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Database maintenance site: Research Organization of Information and Systems National Institute of Genetics
Organism(s) covered: Homo sapiens | Mus musculus | Rattus norvegicus
Description: hGTOP is a database of human, mouse, rat proteins identified in the genome, focuses on a structural annotation. The original GTOP (https://integbio.jp/dbcatalog/en/record/nbdc00... Show Details...
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Database maintenance site: Waseda University
Organism(s) covered:
Description: VaProS is a new data cloud for Structural Life Science, integrates different databases/tools to provides protein/genome information for researchers. VaProS accepts keywords, DNA... Show Details...
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Database maintenance site: Iwate Tohoku Medical Megabank Organization
Organism(s) covered: Homo sapiens
Description: iMETHYL is an integrative multi-omics (methylome, transcriptome, and genome) database. These data were obtained from WGBS, WGS, and RNA-Seq for CD4+ T-lymphocytes, monocytes, an... Show Details...
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Database maintenance site: The University of Tokyo Graduate School of Science The Misaki Marine Biological Station
Organism(s) covered: Anneissia japonica
Description: Misaki Marine Biological Station, University of Tokyo, participates in National Bio Resource Project for collection, maintenance and distribution of living juveniles and adults,... Show Details...
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Database maintenance site: RIKEN Center for Brain Science
Organism(s) covered: Callithrix jacchus
Description: The Marmoset Gene Atlas provides a whole brain, high-resolution gene expression atlas in the common marmoset (Callithrix jacchus). It provides in situ hybridization (ISH) data ... Show Details...
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Database maintenance site: RIKEN Center for Brain Science, Brain/MINDS Database Council
Organism(s) covered: Callithrix jacchus | Homo sapiens
Description: The Brain/MINDS Data Portal shares the data being produced in the Brain/MINDS project. The common marmoset (Callithrix jacchus) 3D reference brain atlas is available for downloa... Show Details...
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Database maintenance site: Tokai University School of Medicine
Organism(s) covered: cellular organisms | Viroids | Viruses
Description: GenomeSync is a large database of genome sequences mostly from NCBI Assembly. Once GenomeSync is downloaded using Syncthing software, a local copy of the database is continuousl... Show Details...
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Database maintenance site: National Institute of Infectious Diseases
Organism(s) covered: Escherichia coli | Klebsiella pneumoniae | Enterobacter cloacae | Salmonella | Klebsiella oxytoca | ...
Description: GenEpid-J is an integrated database of pathogen genomics and epidemiology focused on plasmids involving in the antimicrobial resistance. Show Details...
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Database maintenance site: Naturalis Biodiversity Center
Organism(s) covered: all
Description: Linnaeus NG is a data management system for species information developed and maintained by Naturalis Biodiversity Center. It contains a wide variety of information about taxa. ... Show Details...
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Database maintenance site: GlyCosmos Portal
Organism(s) covered:
Description: GlyCosmos Portal is a portal site of glycoscience-related web resources, which includes databases and repositories for glycogenes, glycoconjugates such as glycoproteins and glyc... Show Details...
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Database maintenance site: Niigata University Faculty of Engineering Department of Information Engineering
Organism(s) covered: Bacteria | Archaea | Viruses
Description: tRNADB-CE is a database of manually curated tRNA gene information. It contains tRNA sequences that have been evaluated experimentally after initial identification by computation... Show Details...
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Database maintenance site: Boyce Thompson Institute for Plant Research
Organism(s) covered: Solanum lycopersicum | Solanum pimpinellifolium | Solanum tuberosum | Solanum phureja | Nicotiana | ...
Description: SGN is a database of genome and phenotype data for species in the Solanaceae and their close relatives. It provides genome maps and sequences, QTLs, RNA-seq, and microarray data... Show Details...
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Database maintenance site: Department of Molecular Genetics, Brain Research Institute, Niigata University
Organism(s) covered: Homo sapiens
Description: JFADdb contains information about mutations in genes linked to dominantly inherited Alzheimer's disease (APP, PSEN1, and PSEN2) as well as FTDP-17 (MAPT and GRN) in the Japanese... Show Details...
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Database maintenance site: Osaka University
Organism(s) covered: Homo sapiens
Description: The site introduces evidence-based information on how to consider the relative advantages and disadvantages of complementary and alternative medicine including folk therapy. The... Show Details...
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Database maintenance site: ATCC Standards Development Organisation, CellBank Australia, Genetica DNA Laboratories, Japanese Collection of Research Bioresources Cell Bank (JCRB Cell Bank), Riken Resource Centre, Swiss Institute of Bioinformatics (SIB), UK Global Biological Standards Institute (GBSI)
Organism(s) covered: All
Description: This database lists cell lines that are currently known to be cross-contaminated or otherwise misidentified. Show Details...
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Database maintenance site: Department of Biochemistry and Biomedical Sciences, McMaster Universit
Organism(s) covered: Bacteria
Description: A bioinformatic database of antimicrobial resistance genes, their products and associated phenotypes. Show Details...
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Database maintenance site: Australian Research Council, University of Queensland
Organism(s) covered: Brassica
Description: This site hosts Brassica genome databases. Show Details...
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Database maintenance site: Australian Research Council, Edwards Group, University of Western Australia, University of Queensland
Organism(s) covered: Triticum
Description: An integrated database and portal for wheat genome information. Show Details...
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Database maintenance site:
Organism(s) covered: Caenorhabditis elegans
Description: Whole-genome sequence data, variant calls, and annotations of natural genetic variation in C. elegans species. Show Details...
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Database maintenance site:
Organism(s) covered: Homo sapiens
Description: European Organisation for Research and Treatment of Cancer database of clinical trials. Show Details...
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Database maintenance site: National Institutes of Health
Organism(s) covered: All
Description: The Cancer gene expression and microarray data of the National Cancer Institute Show Details...
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Database maintenance site: Institute of Human Genetics (IGH)
Organism(s) covered: Homo sapiens
Description: A registry of Hereditary Auto-inflammatory Disorder Mutations. Show Details...
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Database maintenance site: Institut Pasteur
Organism(s) covered: Bacteria
Description: GenoList is an integrated environment for comparative exploration of microbial genomes. The current release integrates genome data for over 700 species (Genome Reviews). The que... Show Details...
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Database maintenance site: Indian Institute of Science
Organism(s) covered: All
Description: A web based database of Transmembrane Helices in Genome Sequences. Show Details...
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Database maintenance site: Bioinformatics Portal Site (BPS)
Organism(s) covered: Fungi
Description: The CFGP (Comparative Fungal Genomics Platform) was designed for comparative genomics projects with diverse fungal genomes. Show Details...
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Database maintenance site: Baylor College of Medicine
Organism(s) covered: All
Description: Relative evolutionary importance of amino acids within a protein sequence. Show Details...
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Database maintenance site: Institute of Molecular Medicine (IMM), Peking University
Organism(s) covered: Rhesus macaques
Description: A comprehensive online knowledgebase for the monkey research community. Show Details...
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Database maintenance site: University of Washington
Organism(s) covered: Brugia malayi | Leishmania major | Schistosoma mansoni | Toxoplasma gondii
Description: Identification and ranking of targets against neglected tropical diseases Show Details...
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Database maintenance site: Structural Bioinformatics Group, Institute of Molecular Biology and Bioinformatics, Charité-University Medicine Berlin
Organism(s) covered: All
Description: Drug-related information: medical indications, adverse drug effects, drug metabolism and Gene Ontology terms of the target proteins. Show Details...
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Database maintenance site: Dana-Farber Cancer Institute
Organism(s) covered: Homo sapiens | Mus musculus | Rattus norvegicus
Description: Comparison system for cancer stem cell analysis Show Details...
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Database maintenance site: Institute of Biomedical Sciences (IBMS), Academia Sinica
Organism(s) covered: Homo sapiens
Description: Integrated Genomic Database of Non-Small Cell Lung Cancer. Show Details...
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Database maintenance site: Myongji University
Organism(s) covered: Canis familiaris | Danio rerio | Homo sapiens | Mus musculus | Rattus norvegicus
Description: Death Domain Database is a manually curated database of protein-protein interactions for Death Domain Superfamily. Show Details...
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Database maintenance site: Center for Bioinformatics (CBI), Peking University
Organism(s) covered: Homo sapiens
Description: Autism genetics KnowledgeBase, an evidence-based knowledgebase of autism genetics. Show Details...
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Database maintenance site: Stanford University School of Medicine
Organism(s) covered: Homo sapiens
Description: Oligonucleotides for targeted resequencing of the human genome Show Details...
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Database maintenance site: Biological Data Management and Technology Center, Lawrence Berkeley National Laboratory
Organism(s) covered: Archaea | Bacteria | Eukaryota | Viruses
Description: The Integrated Microbial Genomes (IMG) system serves as a community resource for analysis and annotation of genome and metagenome datasets in a comprehensive comparative context... Show Details...
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Database maintenance site:
Organism(s) covered: Arabidopsis thaliana
Description: T-DNA insertions in Arabidopsis and their flanking sequence tags. Show Details...
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Database maintenance site: Center for Comparative Functional Genomics, Department of Biology, New York University, Max Delbrueck Center for Molecular Medicine (MDC), Max Planck Institute for Biology of Ageing, Howard Hughes Medical Institute
Organism(s) covered: Caenorhabditis elegans | Homo sapiens | Mus musculus
Description: Database of RNA interactions in post-transcriptional regulation. Show Details...
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Database maintenance site: Institute of Biochemistry and Biophysics Polish Academy of Sciences
Organism(s) covered: Arabidopsis thaliana | Caenorhabditis elegans | Drosophila melanogaster | Escherichia coli | Homo sapiens | ...
Description: A database for systems biology of DNA dynamics during the cell life. Show Details...
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Database maintenance site:
Organism(s) covered: Caenorhabditis | Danio rerio | Drosophila | Homo sapiens | Mus musculus | ...
Description: The primary mission of the Alliance of Genome Resources (the Alliance) is to develop and maintain sustainable genome information resources that facilitate the use of diverse mod... Show Details...
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Database maintenance site: Oregon State University, Bioversity International, New York Botanical Garden, Lawrence Berkeley National Laboratory
Organism(s) covered: Rhodophyta | Phaeophyceae | Chlorophyta | Arabidopsis thaliana | Bryophyta | ...
Description: A resource providing data on bioentities and their associated ontology terms for Plant Biology. The database provides access to ontology-based annotations of genes, phenotypes a... Show Details...
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Database maintenance site: Indiana University Bloomington
Organism(s) covered: All
Description: An open, online platform that provides seamless access to cloud computing infrastructure and brain data and data derivatives. Brain Life addresses challenges to neuroscience ope... Show Details...
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Database maintenance site: Facultad de Ciencias Exactas y Naturales - Universidad de Buenos Aires
Organism(s) covered: All
Description: The Target-Pathogen database is a bioinformatic approach to prioritize drug targets in pathogens. Available genomic data for pathogens has created new opportunities for drug dis... Show Details...
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Database maintenance site: Indraprastha Institute of Information Technology (IIIT-Delhi)
Organism(s) covered: All
Description: Flavor is an expression of olfactory and gustatory sensations experienced through a multitude of chemical processes triggered by molecules. Beyond their key role in defining tas... Show Details...
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Database maintenance site:
Organism(s) covered: All
Description: FuzDB compiles experimentally observed fuzzy protein complexes, where intrinsic disorder (ID) is maintained upon interacting with a partner (protein, nucleic acid or small molec... Show Details...
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Database maintenance site: Institute of Enzymology, Research Centre for Natural Sciences, Hungarian Academy of Sciences, MTA-ELTE Momentum Bioinformatics Research Group
Organism(s) covered: All
Description: Disordered Binding Sites (DIBS) is a repository of protein complexes that are formed by ordered and disordered proteins. Intrinsically disordered proteins (IDPs) do not have a s... Show Details...
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Database maintenance site: Institute of Enzymology, Research Centre for Natural Sciences, Hungarian Academy of Sciences, MTA-ELTE Bioinformatics Research Group
Organism(s) covered: All
Description: Mutual Folding Induced by Binding (MFIB) is a repository of protein complexes for which the folding of each constituent protein chain is coupled to the interaction forming the c... Show Details...
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Database maintenance site: Ludwig-Maximilians-Universität München, Department Biologie II, Division of Neurobiology, Leibniz Supercomputing Centre of the Bavarian Academy of Sciences and Humanities
Organism(s) covered: All
Description: The German Neuroinformatics Node's data infrastructure (GIN) services provide a platform for comprehensive and reproducible management and sharing of neuroscience data. Building... Show Details...