Database maintenance site: Tokyo University of Marine Science and Technology
Organism(s) covered:All
Description: JEDI System/OCEANS DB is a database containing images of marine plankton and environmental monitoring data. The physical, chemical, biological and engineering data observed by O...Show Details...
Database maintenance site: AIST (National Institute of Advanced Industrial Science and Technology)
Organism(s) covered:Homo sapiens
Description: RNAapt3D is a database of RNA aptamer which contains RNA sequences, their secondary/tertiary structural information, target proteins of RNA aptamers and network of RNA-protein i...Show Details...
Database maintenance site: AIST (National Institute of Advanced Industrial Science and Technology)
Organism(s) covered:Homo sapiens
Description: Phosprof (phosphorylation profiling database) is a database to present cellular response to representative drugs as the significant pathways. It based on the original analysis o...Show Details...
Database maintenance site: NCBI (National Center for Biotechnology Information)
Organism(s) covered:
Description: PubChem is the world's largest collection of freely accessible chemical information. Searches can be performed via a number of descriptors such as name, molecular formula and st...Show Details...
Database maintenance site: Bioinformation and DDBJ Center, National Institute of Genetics, Research Organization of Information and Systems
Organism(s) covered:
Description: MetaboBank is an integrated metabolome data repository. It contains various metabolome data such as experimental raw data from mass spectrometry (MS), NMR analysis, imaging MS ...Show Details...
Database maintenance site: NBDC (Japan Science and Technology Agency Department of NBDC Program)
Organism(s) covered:Homo sapiens
Description: This site is a platform for sharing data from studies in humans, providing rules and frameworks for promoting the utilization and sharing of the enormous amount of human data wh...Show Details...
Description: The ABCD database is a repository of sequenced antibodies, integrating curated information about the antibody and its antigen with cross-links to standardized databases of chemi...Show Details...
Database maintenance site: National Museum of Nature and Science
Organism(s) covered:Tracheophyta | Ascomycota
Description: Flora of Myanmar Database is a database about flora specimens collected in Myanmar (Burma). It contains the records of specimens deposited in herbaria of National Museum of Natu...Show Details...
Database maintenance site: RIKEN CSRS (RIKEN Center for Sustainable Resource Science)
Organism(s) covered:Sorghum bicolor
Description: MOROKOSHI Sorghum transcriptome database provides transcriptomic data in Sorghum bicolor. It contains information of ESTs from a normalized full-length cDNAs library of five gro...Show Details...
Database maintenance site: Faculty of Science, Ochanomizu University, Faculty of Science and Engineering, Waseda University
Organism(s) covered:All
Description: BioHiKR is a database for bioluminescence. Each entry contains information of organism, protein, habitat, wave and ligand, which data links to Wikipedia and Uniprot and/or PDBj.Show Details...
Description: OHNOLOGS is a repository of genes retained from whole genome duplications in the Vertebrate genomes. It contains ohnolog pairs and families in various vertebrate genomes compute...Show Details...
Database maintenance site: CCMB (CSIR-Centre for Cellular & Molecular Biology)
Organism(s) covered:All
Description: MSDB is a database of simple sequence repeats (SSRs), also known as microsatellites. Each entry contains chromosome No., repeat class, repeat length, related gene name, annotati...Show Details...
Database maintenance site: Koch Institute for Integrative Cancer Research at MIT, University of Illinois at Chicago
Organism(s) covered:Homo sapiens | Mus musculus
Description: MatrisomeDB is a database of proteomic data for extracellular matrix (ECM). It provides hierarchically-clustered tissue distribution heatmap of proteins with confidence score, a...Show Details...
Description: EnhancerAtlas is a database providing enhancer annotation in nine species including human (hg19), mouse (mm9), fly (dm3), worm (ce10), zebrafish (danRer10), rat (rn5), yeast (sa...Show Details...
Database maintenance site: USC (University of Southern California)
Organism(s) covered:All
Description: DNAproDB is a database for DNA-protein complexes. The site consists of a database, structure processing pipeline and web-based visualization tool. The database contains structur...Show Details...
Database maintenance site: UTHealth (University of Texas Health Science Center at Houston)
Organism(s) covered:Hepatitis B virus | Human papillomavirus | Human gammaherpesvirus 4 | Adeno-associated virus - 2 | Human immunodeficiency virus | ...
Description: VISDB is a knowledgebase of site-related information about viruses integrated into human genome. It covers 9 main viruses, including 5 DNA oncoviruses (HBV, HPV, EBV, MCV, AAV2)...Show Details...
Description: VDJbase is a database of adaptive immune receptor genes, genotypes and haplotypes. In this database, collections are inferred from immune receptor repertoire sequences, and also...Show Details...
Description: VARIDT is a database for drug transporters (DTs) confirmed by their corresponding drugs, which covers the comprehensive sets of DT variability data, and allows the interplay ana...Show Details...
Database maintenance site: Material Management Center, Kyushu University
Organism(s) covered:All
Description: MMC is a database of tangible research materials (Materials) which are created or acquired through research activities. This database contains information about materials such a...Show Details...
Database maintenance site: Pharmaceutical and Medical Device Regulatory Science Society of Japan
Organism(s) covered:
Description: MedDRA/J is a Japanese version of MedDRA (http://www.meddra.org) which is a pragmatic, medically valid terminology with an emphasis on ease of use for data entry, retrieval, ana...Show Details...
Database maintenance site: UTHealth (University of Texas Health Science Center at Houston)
Organism(s) covered:Homo sapiens
Description: TSEA-DB is a database for trait-associated tissue specificity. This database contains trait collection decoded with tissue-specific enrichment analysis (TSEA) and their related ...Show Details...
Description: TerrestrialMetagenomeDB is a repository of curated metadata for terrestrial metagenomes. Data are collected from MG-RAST and the Sequence Read Archive (SRA), the two main metage...Show Details...
Database maintenance site: Faculty of Biology, Adam Mickiewicz University
Organism(s) covered:Primates
Description: SyntDB is a database about human long non-coding RNAs conserved across primates. Each record contains Ensembl ID, reference alias, lncRNA, biotype of reference transcript, isofo...Show Details...
Database maintenance site: College of informatics, HZAU
Organism(s) covered:Homo sapiens
Description: SNP2APA is a database for exploring the effects of single nucleotide polymorphisms (SNPs) on alternative polyadenylation (APA). SNP2APA allows users to : Browse or search cis-ap...Show Details...
Database maintenance site: Department of Biochemistry, University of Sherbrooke
Organism(s) covered:Homo sapiens
Description: snoDB is a database of human snoRNA, which data are collected from other established databases, publications and experimental data generated by the group. Each entry contains in...Show Details...
Description: This is a database for all members in whole of Asterales. It includes taxon name, chromosome number (n and 2n), DNA contents, genbank accession numbers (for the nuclear or chlor...Show Details...
Database maintenance site: AIST (National Institute of Advanced Industrial Science and Technology)
Organism(s) covered:Homo sapiens
Description: mFAERS is a search system about side effects reported in the FDA Adverse Event Reporting System (FAERS) public data. It provides information on intractable diseases designated b...Show Details...
Description: SARS-CoV2-COV2-NMR DB is a 2D NMR spectra database about SARS-CoV-2 proteins. It retains 2D NMR spectra of 22 structural domains, including 3 non-canonical sequences, which ensu...Show Details...
Description: gGENEPID is an integrated database for pathogen genome and epidemiological investigation. It contains genome information about 35 pathogens stipulated in the Infectious Diseases...Show Details...
Description: SEA is a database for the expression of small RNA (miRNA, piRNA, snoRNA, snRNA, siRNA) and pathogens. It contains sRNA expression information from re-analyzed published samples,...Show Details...
Database maintenance site: Research Center of Basic Medical Sciences, Tianjin Medical University
Organism(s) covered:Homo sapiens
Description: QTLbase is a database about genome-wide QTL summary statistics for many human molecular traits across over 70 tissue/cell types. It contains associations between genotypes and m...Show Details...
Database maintenance site: Beijing Agro-Biotechnology Research Center, BAAFS
Organism(s) covered:Chlorophyta | Embryophyta
Description: PmiREN is a comprehensive database for functional plant miRNA in about 180 species phylogenetically ranging from chlorophytes to angiosperms. Each record contains information ab...Show Details...
Database maintenance site: Shanghai Children's Hospital, Shanghai Jiao Tong University
Organism(s) covered:Homo sapiens
Description: PhenoModifier is a database about genetic modifiers for elucidating the genetic basis of human phenotypic variation. It contains human genetic modifiers information, which manua...Show Details...
Description: It is a database for non-B DNAs which do not fall into a right-handed Watson-Crick double-helix. This database provides information of genomic regions predicted to form non-B DN...Show Details...
Database maintenance site: NIHS (National Institute of Health Sciences)
Organism(s) covered:
Description: It provides information of allergenic proteins and low-molecular weight allergenic compounds. The allergenic proteins have been collected from literature sources and AllergenOnl...Show Details...
Description: PhaSePro is a database of proteins driving LLPS (liquid-liquid phase separation) in cells. For each of them, this database mainly provides the protein information, the coding ge...Show Details...
Description: PhaSepDB is a database of proteins related to phase separation (PS) and Membraneless organelles (MLOs) . This database mainly contains the protein names, links to Uniprot, codin...Show Details...
Database maintenance site: University of Toyama Institute of Natural Medicine
Organism(s) covered:Viridiplantae
Description: KampoDB is an integrated database for natural medicines such as herbal medicines. It provides information of kampo formulas, including crude drugs, constituent natural compounds...Show Details...
Description: AlphaFold DB is a database for protein structure predictions for human and 20 other key organisms. Each entry contains basic information about the protein and three separate out...Show Details...
Database maintenance site: Graduate School of Integrated Sciences for Life, Hiroshima University
Organism(s) covered:Bacteria
Description: It is a set of 16S RNA sequences for metagenomic analysis using kraken2. Sequences with taxonomy ID, accession No. and definition are provided in fasta format.Show Details...
Database maintenance site: China National Center for Bioinformation / Beijing Institute of Genomics, Chinese
Organism(s) covered:Bacteria | Archaea
Description: PADS Arsenal is a database of genes associated with 18 categories of prokaryotic antiviral defense systems. This database mainly contains Assembly accessions, the number of gene...Show Details...
Description: oRNAment is a database of putative RBP (RNA-binding-protein) binding site instances in coding and non-coding RNA in five species. For each RBP, this database mainly provides an ...Show Details...
Database maintenance site: Institute of Structural and Molecular Biology, Birkbeck College
Organism(s) covered:Homo sapiens
Description: OGRDB is a database of the repertoires of human germline receptor alleles. Each data is submitted by researchers and reviewed and accepted by IARC (International Agency for Rese...Show Details...
Database maintenance site: Huazhong Agricultural University, College of Informatics
Organism(s) covered:Homo sapiens
Description: ncRNA-eQTL is a database of SNPs influencing ncRNA (non-coding RNA) expression. It provides information of ncRNA-related eQTLs (Expression quantitative trait locus) across 33 ca...Show Details...
Database maintenance site: RIKEN (The Institute of Physical and Chemical Research)
Organism(s) covered:Homo sapiens
Description: ChemProteoBase is a database about proteomic profiling of cells treated with chemical drugs based on 2D-DIGE. Each entry contains protein name, position (x, y), Mascot Score, Un...Show Details...
Database maintenance site: Nara Institute of Science and Technology
Organism(s) covered:Homo sapiens
Description: KNApSAcK Biomarker is a database for human biomarkers that provide indication of diseases. The biomarker information, which are biomarker name, related diseases, marker type (me...Show Details...
Database maintenance site: Hiroshima University Faculty of Pharmaceutical Sciences
Organism(s) covered:Homo sapiens
Description: Phos-tag SDS-PAGE database is a collection about Phos-tag (a novel phosphate-binding tag) SDS-PAGE images for analyzing phosphorylated proteins. Each entry contains SDS-PAGE ima...Show Details...
Database maintenance site: Japan Newt Research Community
Organism(s) covered:Cynops pyrrhogaster
Description: IMORI is a database of sequence resources about the Japanese fire bellied newt. It contains sequences from transcriptome data in various stages, such as development, regeneratio...Show Details...
Description: J-amir is a collection of digital data about aquatic macroinvertebrates inhabiting Japan. It contains photo-images and analyzed DNA sequences (partial coding regions of 18S rRNA...Show Details...
Description: ADMIX database is an integrated database about Alzheimer's disease multi-omics data. It contains publicly available data in genomics, epigenomics, transcriptomics and proteomics...Show Details...
