List of Database Records  (records : )

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Database maintenance site: Nara Institute of Science and Technology
Organism(s) covered: Homo sapiens
Description: KNApSAcK Biomarker is a database for human biomarkers that provide indication of diseases. The biomarker information, which are biomarker name, related diseases, marker type (me... Show Details...
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Database maintenance site: Hiroshima University Faculty of Pharmaceutical Sciences
Organism(s) covered: Homo sapiens
Description: Phos-tag SDS-PAGE database is a collection about Phos-tag (a novel phosphate-binding tag) SDS-PAGE images for analyzing phosphorylated proteins. Each entry contains SDS-PAGE ima... Show Details...
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Database maintenance site: Japan Newt Research Community
Organism(s) covered: Cynops pyrrhogaster
Description: IMORI is a database of sequence resources about the Japanese fire bellied newt. It contains sequences from transcriptome data in various stages, such as development, regeneratio... Show Details...
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Database maintenance site: Osaka Prefecture University
Organism(s) covered: Ephemeroptera | Odonata | Plecoptera | Hemiptera | Megaloptera | ...
Description: J-amir is a collection of digital data about aquatic macroinvertebrates inhabiting Japan. It contains photo-images and analyzed DNA sequences (partial coding regions of 18S rRNA... Show Details...
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Database maintenance site:
Organism(s) covered: Homo sapiens
Description: ADMIX database is an integrated database about Alzheimer's disease multi-omics data. It contains publicly available data in genomics, epigenomics, transcriptomics and proteomics... Show Details...
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Database maintenance site: Research Organization of Information and Systems Database Center for Life Science
Organism(s) covered: Homo sapiens
Description: NanbyoData provides informative data related to intractable diseases using Nanbyo Disease Ontology (NANDO). Designated intractable diseases and chronic specific pediatric diseas... Show Details...
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Database maintenance site: LINK-Group
Organism(s) covered: Homo sapiens
Description: Translocatome is a database that collects and characterises manually curated and predicted translocating proteins from human cells. The prediction is made by a gradient boosting... Show Details...
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Database maintenance site: College of Life Science and Technology, Huazhong Agricultural University
Organism(s) covered: Bos taurus | Caenorhabditis | Danio rerio | Drosophila | Equus caballus | ...
Description: Many animal species present sex differences. Sex-associated genes (SAGs), which have female-biased or male-biased expression, have major influences on the remarkable sex differe... Show Details...
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Database maintenance site: EMBL-EBI
Organism(s) covered: All
Description: Genome properties is an annotation system whereby functional attributes can be assigned to a genome, based on the presence of a defined set of protein signatures within that gen... Show Details...
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Database maintenance site: Boyce Thompson Institute (BTI), Cornell University
Organism(s) covered: Cucurbitaceae
Description: The recent genome sequence assemblies of major cucurbit crop species, including cucumber, melon, watermelon and pumpkin have made it feasible to use advanced genomic approaches ... Show Details...
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Database maintenance site: Bioinformatics Institute (BII), A*STAR
Organism(s) covered: All
Description: The AlloMAPS database provides data on the energetics of communication in proteins with well-documented allosteric regulation, allosteric signalling in PDBselect chains, and all... Show Details...
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Database maintenance site: Swiss Institute of Bioinformatics (SIB), Switzerland
Organism(s) covered: Bacillus subtilis | Brucella suis | Burkholderia pseudomallei K96243 | Burkholderia thailandensis E264 | Chlamydophila caviae | ...
Description: The Swissregulon Database contains genome-wide annotations of regulatory sites. The predictions are based on Bayesian probabilistic analysis of a combination of input informatio... Show Details...
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Database maintenance site: European Medicines Agency, London, United Kingdom
Organism(s) covered: Homo sapiens
Description: The EU Clinical Trials Register contains information on interventional clinical trials on medicines conducted in the European Union (EU), or the European Economic Area (EEA) whi... Show Details...
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Database maintenance site: European Bioinformatics Institute (EMBL-EBI), National Center for Biotechnology Information (NCBI), Bioinformation and DDBJ Center, National Institute of Genetics, Research Organization of Information and Systems
Organism(s) covered: All
Description: It is a portal site for the INSDC(International Nucleotide Sequence Database Collaboration), which is an initiative operated between DDBJ, EMBL-EBI and NCBI. Each organization ... Show Details...
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Database maintenance site: European Bioinformatics Institute (EMBL-EBI), National Center for Biotechnology Information (NCBI)
Organism(s) covered: Homo sapiens
Description: LRG is a database of stable genomic, transcript and protein reference sequences for reporting clinically relevant sequence variants. NCBI (RefSeq) and EMBL-EBI (Ensembl/GENCODE)... Show Details...
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Database maintenance site: Bioinformation and DDBJ Center, National Institute of Genetics, Research Organization of Information and Systems
Organism(s) covered: All
Description: DDBJ BioSample is a database to store descriptive information about biological samples used to generate experimental data. The data are shared among DDBJ, EBI and NCBI BioSample... Show Details...
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Database maintenance site: The International Council for Harmonisation of Technical Requirements for Pharmaceuticals for Human Use (ICH)
Organism(s) covered:
Description: MedDRA is a standardized medical terminology for regulatory information of medical products. It is available for use in the registration, documentation and safety monitoring of ... Show Details...
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Database maintenance site: Monarch Initiative
Organism(s) covered: Homo sapiens
Description: Mondo is an ontology for integrating disease definitions. It collects disease definitions and data models from numerous sources, which include HPO, OMIM, SNOMED CT, ICD, PhenoDB... Show Details...
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Database maintenance site: McDonnell Genome Institute, Washington University School of Medicine
Organism(s) covered: Homo sapiens
Description: DGIdb is a database about drug-gene interactions and the druggable genome. It collects and integrates drug-gene interactions and gene druggability information from papers, datab... Show Details...
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Database maintenance site: Genome Aggregation Database Consortium
Organism(s) covered: Homo sapiens
Description: GnomAD is a resource for exome and genome sequencing data from a wide variety of large-scale sequencing projects. It contains following datasets; The v2 data set (GRCh37/hg19) p... Show Details...
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Database maintenance site: National Center for Biotechnology Information (NCBI)
Organism(s) covered: Homo sapiens
Description: MedGen is a portal database about conditions and phenotypes related to Medical Genetics. It aggregates terms from the NIH Genetic Testing Registry (GTR), UMLS, HPO, Orphanet, Cl... Show Details...
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Database maintenance site: The Jackson Laboratory
Organism(s) covered: Homo sapiens
Description: The Human Phenotype Ontology (HPO) provides a standardized vocabulary of phenotype specialized in human disease. The medical literatures, Orphanet, DECIPHER, and OMIM are used f... Show Details...
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Database maintenance site: The McDonnell Genome Institute, Washington University School of Medicine
Organism(s) covered: Homo sapiens
Description: CIViC is a knowledgebase for Clinical Interpretation of Variants in Cancer. It has collected knowledge of the therapeutic, prognostic, diagnostic and predisposing relevance of i... Show Details...
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Database maintenance site: World Health Organization
Organism(s) covered: Homo sapiens
Description: This is a website for ICD (International Statistical Classification of Diseases and Related Health Problems) -11, which is an organized collection of global standard terms for h... Show Details...
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Database maintenance site: EMBL-EBI
Organism(s) covered:
Description: ChEMBL is a database for bioactive molecules. It collects information of small molecules, such as calculated properties (e.g. logP, Molecular Weight, Lipinski Parameters, etc.) ... Show Details...
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Database maintenance site: Cornell University
Organism(s) covered: Homo sapiens | Arabidopsis thaliana | Caenorhabditis elegans | Drosophila melanogaster | Drosophila melanogaster | ...
Description: INstruct is a database of protein interactome networks in human and six model organisms. In this site, protein-protein interaction interfaces have been identified based on struc... Show Details...
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Database maintenance site: Cornell University
Organism(s) covered: Homo sapiens | Saccharomyces cerevisiae | Schizosaccharomyces pombe | cDrosophila melanogaster | Caenorhabditis elegans | ...
Description: HINT (High-quality INTeractomes) is a database of high-quality protein-protein interactions. The interactions are collected from 8 interactome resources (BioGRID, MINT, iRefWeb,... Show Details...
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Database maintenance site: National Institute of Health Sciences
Organism(s) covered: Entoloma rhodopolium | Omphalotus guepiniformis | Colchicum autumnale | Narcissus | Veratrum | ...
Description: MushPlant database is a database about toxic plants and mushrooms. It contains statistical data of food poisoning cases caused by toxic plants and mushrooms between 2000 and 201... Show Details...
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Database maintenance site: Broad Institute, Inc., UC San Diego
Organism(s) covered: Homo sapiens
Description: MSigDB is a collection of annotated gene sets for use with Enrichment Analysis (GSEA) software which is a computational method that determines whether an a priori defined set of... Show Details...
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Database maintenance site: Icahn School of Medicine at Mount Sinai
Organism(s) covered: Homo sapiens | Mus musculus
Description: CREEDS is a knowledgebase for associations between drugs, genes and diseases based on the data from a crowdsourcing microtask project implemented to annotate and reanalyze gene ... Show Details...
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Database maintenance site: National Agriculture and Food Research Organization
Organism(s) covered: Citrus unshiu | Citrus trifoliata | Citrus clementina | Citrus sinensis | Citrus maxima | ...
Description: Mikan Genome Database (MiGD) is an integrated database for mandarin molecular breeding. It provides the following contents: (1) comparative genome browser which shows genome-wid... Show Details...
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Database maintenance site: RIKEN
Organism(s) covered: Homo sapiens
Description: AMED Cardiotoxicity Database is a database about small molecules which bind to various ion channels and potentially cause cardiotoxic risk.It compiles cardiotoxicity-related inf... Show Details...
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Database maintenance site: Development of a Drug Discovery Informatics System
Organism(s) covered: Homo sapiens | Rattus norvegicus
Description: Development of a Drug Discovery Informatics System is a portal site containing databases and tools for predicting pharmacokinetics and toxicity (cardiotoxicity / hepatotoxicity)... Show Details...
Database maintenance site: Institute of Biophysics, Chinese Academy of Sciences
Organism(s) covered: Homo sapiens | Mus musculus | Rattus norvegicus | Drosophila melanogaster | Caenorhabditis elegans | ...
Description: piRBase stores information on piRNAs and piRNA-associated data to support piRNA functional analysis. Show Details...
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Database maintenance site: EMBL-EBI, The Jackson Laboratory
Organism(s) covered: Mus musculus | Homo sapiens
Description: PDX Finder is an open repository for the upload and storage of clinical, genomic and functional Patient-Derived Xenograph (PDX) data which provides a comprehensive global catalo... Show Details...
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Database maintenance site: BIG Data Center, Beijing Institute of Genomics, Chinese Academy of Sciences
Organism(s) covered: Homo sapiens
Description: LncBook is a curated knowledgebase of human lncRNAs that features a comprehensive collection of human lncRNAs and systematic curation of lncRNAs by multi-omics data integration,... Show Details...
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Database maintenance site: Beijing Proteome Research Center (BPRC)
Organism(s) covered: AII
Description: iProX is a public platform for collecting and sharing raw data, analysis results and metadata obtained from proteomics experiments. The iProX repository employs a web-based prot... Show Details...
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Database maintenance site: Fudan University
Organism(s) covered:
Description: PreMedKB is a database for integrating information on diseases, genes, variants, drugs, and the relationships between any two or more of these four components. This database con... Show Details...
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Database maintenance site: La Trobe Institute for Molecular Sciences
Organism(s) covered: All
Description: Vesiclepedia is a manually curated compendium of molecular data (lipid, RNA and protein) identified in Extracellular vesicles. The Extracellular vesicles are classified into fol... Show Details...
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Database maintenance site: University of Melbourne
Organism(s) covered: Homo sapiens | Mus musculus
Description: Stemformatics is a web-based data platform to find interesting genes in gene expression datasets of stem cells. It contains public gene expression datasets derived from microarr... Show Details...
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Database maintenance site: ICube, Université de Strasbourg
Organism(s) covered: Eukaryota | Archaea | Bacteria
Description: OrthoInspector is a catalog of orthologs predicted across three domains of life, Eukaryota, Bacteria, and Archaea. Each entry provides a fully searchable list of orthologs and i... Show Details...
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Database maintenance site: TAGC, Inserm U1090
Organism(s) covered: Homo sapiens | Mus musculus | Drosophila melanogaster | Caenorhabditis elegans | Saccharomyces cerevisiae
Description: MoonDB is a database of predicted and manually curated extreme multifunctional (EMF) proteins and moonlighting proteins, which are proteins that perform multiple unrelated funct... Show Details...
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Database maintenance site: College of Bioinformatics Science and Technology, Harbin Medical University
Organism(s) covered: all
Description: LncACTdb is a database for LncRNA-Associated Competing Triplets (LncACT). It provides manually curated and predicted ceRNA interactions. The class of ceRNAs in LncACTdb contains... Show Details...
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Database maintenance site: Network Biomedicine Lab, Yonsei University, Marcotte Lab, University of Texas at Austin
Organism(s) covered: Homo sapiens
Description: HumanNet is a database for human gene networks, which integrates diverse types of omics data and provides gene-disease associations by their own network inference algorithms. Us... Show Details...
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Database maintenance site: The Walter and Eliza Hall Institute of Medical Research
Organism(s) covered: Homo sapiens | Mus musculus
Description: Haemosphere is a data portal for RNA-Seq datasets, including each celltype of the dataset, cell_lineage, tissue, treatment, immunophenotype, species, and strain, etc. It contain... Show Details...
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Database maintenance site: EMBL Heidelberg
Organism(s) covered: Homo sapiens | Mus musculus
Description: GENCODE is a database to identify and classify all gene features in the human and mouse genomes. It provides foundational reference genome annotation, and includes comprehensive... Show Details...
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Database maintenance site: University of Washington
Organism(s) covered: Homo sapiens
Description: It is a site for Combined Annotation-Dependent Depletion (CADD), which is a framework for scoring the deleteriousness of single nucleotide variants as well as insertion/deletion... Show Details...
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Database maintenance site: Weizmann Institute of Science
Organism(s) covered: Saccharomyces cerevisiae
Description: YeastRGB is a database for abundance and localization of proteins in Saccharomyces cerevisiae. It provides fluorescence microscopy data of yeasts, which were introduced ORF libr... Show Details...
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Database maintenance site: Luxembourg Centre for Systems Biomedicine (LCSB) of the University of Luxembourg
Organism(s) covered: Homo sapiens | Bacteria
Description: VMH is an integrated database for human and gut microbial metabolisms linked to diseases and nutritional data. The core data are hundreds of genome-scale metabolic reconstructio... Show Details...
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Database maintenance site: University of Michigan Medical School
Organism(s) covered: Bacteria | Viruses | Parasitus | Fungi
Description: Victors is a database about virulence factors (VFs) collected by manual curation from peer-reviewed publications. Those VFs come from pathogenic organisms showed pathogenicity t... Show Details...