List of Database Records  (records : )

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Database maintenance site: Catalyst Informatics Project
Organism(s) covered:
Description: Catalyst Acquisition by Data Science (CADS) is an integrated visual platform for materials informatics. It provides three basic functions for users: 1) Data Management: CADS pro... Show Details...
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Database maintenance site: Tokai University School of Medicine
Organism(s) covered: Eukaryota | Viruses
Description: pEVE is a database about predicted endogenous viral elements (EVEs) in eukaryotic genomes. It contains BLASTN search results of eukaryotic and viral genomes as target and query ... Show Details...
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Database maintenance site: Japan Monkey Centre
Organism(s) covered: Cebuella | Aotus | Cebus | Macaca | Cercopithecus | ...
Description: JMC Primates Brain Imaging Repository is a collection of high-resolution MRI data of non-human primate brains stored in Japan Monkey Centre. Each record contains species informa... Show Details...
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Database maintenance site: Japan Science and Technology Agency National Bioscience Database Center
Organism(s) covered: Bovidae | Cervidae | Giraffidae | Hippopotamidae | Cetacea | ...
Description: Collagenseq is a reference database about type I collagen. Each record obtained from various species contains academic name and English name of the organism, taxonomy ID, and th... Show Details...
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Database maintenance site: CBBD-OIL
Organism(s) covered: Homo sapiens | Mus musculus
Description: LncRRIsearch is a web server for comprehensive prediction of interactions between long non-coding RNA (lncRNA)-lncRNA and lncRNA-mRNA in human and mouse. Users can also search T... Show Details...
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Database maintenance site: Cistrome Project
Organism(s) covered: Homo sapiens | Mus musculus
Description: Cistrome DB is a portal site for public ChIP-seq and DNase-seq datasets. It provides a comprehensive knowledgebase of all of the publicly available ChIP-Seq and DNase-Seq data i... Show Details...
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Database maintenance site: University of Toronto
Organism(s) covered: Saccharomyces cerevisiae
Description: CYCLoPs is a comprehensive database of protein abundance and localization for budding yeast Saccharomyces cerevisiae. It contains high resolution images covering about 75% of th... Show Details...
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Database maintenance site: Stanford University
Organism(s) covered: Saccharomyces cerevisiae
Description: YeastGFP is a database of yeast strains expressing full-length, chromosomally tagged green fluorescent protein (GFP) fusion proteins. It contains high-resolution, high-coverage ... Show Details...
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Database maintenance site: Institute of Genetics and Molecular and Cellular Biology
Organism(s) covered: Arabidopsis thaliana | Caenorhabditis elegans | Danio rerio | Drosophila melanogaster | Gallus gallus | ...
Description: NGS-QC database is the first QC indicator database covering the largest collection of ChIP-seq and enrichment-related NGS datasets. Most of the current certified entries are par... Show Details...
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Database maintenance site: University of Massachusetts Medical School
Organism(s) covered: Homo sapiens | Mus musculus
Description: Factorbook is a transcription factor (TF)-centric wiki-style repository of all ENCODE ChIP-seq datasets on TF-binding regions, as well as the rich analysis results of these data... Show Details...
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Database maintenance site: Kazusa DNA Research Institute, National Institute of Genetics
Organism(s) covered:
Description: Food Metabolome Repository is a database for food metabolome data obtained using liquid chromatography-mass spectrometry (LC-MS). Each record contains a two-dimensional mass chr... Show Details...
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Database maintenance site: FMODD Consortium
Organism(s) covered: All
Description: FMODB is a database of quantum mechanical data based on the FMO method. It contains PDBID-Chain (detail data of the displayed structure), IFIE SUM (Summation of ES, EX, CT+mix, ... Show Details...
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Database maintenance site: Hiroshima University Amphibian Research Center
Organism(s) covered: Xenopus tropicalis
Description: XenoBiores maintains data collected from the NBRP Xenopus tropicalis Project to establish inbred and standard lines, as well as its supply. It contains information on biological... Show Details...
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Database maintenance site: Molecular Profiling Research Center for Drug Discovery, AIST
Organism(s) covered: Homo sapiens | Rattus norvegicus
Description: toxRank is an application that provides a list of compounds those exhibit an expression profile similar to that of the genes inputted by user. This tool visualizes the clusterin... Show Details...
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Database maintenance site: Molecular Profiling Research Center for Drug Discovery, AIST
Organism(s) covered: Homo sapiens | Rattus norvegicus
Description: toxBridge is a database that stores statistical analysis results using differential gene expression when compounds are exposed. It is possible to display feasible bridging capab... Show Details...
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Database maintenance site: National Institutes of Biomedical Innovation, Health and Nutrition
Organism(s) covered:
Description: TOXPILOT is a system for visualization maps of toxic process ontology (TXPO) which systematizes terms involving toxicity courses and processes. It provides following search cate... Show Details...
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Database maintenance site: National Institutes of Biomedical Innovation, Health and Nutrition, Kumamoto University
Organism(s) covered: Homo sapiens | Rattus norvegicus
Description: DILI-cSEARCH is a comprehensive database about liver toxicity caused by drugs and chemicals. It offers cross search access to information of Open TG-GATEs, DrugMatrix, LINKS and... Show Details...
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Database maintenance site: National Institutes of Biomedical Innovation, Health and Nutrition
Organism(s) covered: rattus | Homo sapiens
Description: DILI-TOOLBOX is a portal site for liver toxicity database and prediction systems developed in the AMED Liver Toxicity Informatics System Development programs. It by the National... Show Details...
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Database maintenance site: Department of Electrical Engineering, National Cheng Kung University
Organism(s) covered: Caenorhabditis elegans | Caenorhabditis briggsae
Description: piRTarBase is a database about PIWI-interacting RNAs (piRNAs) which are a class of small noncoding RNAs that guard animal genomes against mutation by silencing transposons. It p... Show Details...
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Database maintenance site: National Genomics Data Center, Beijing Institute of Genomics, Chinese Academy of Sciences
Organism(s) covered: Viridiplantae
Description: PED is a curated database of RNA editosome in plants, which is focused on the curation, integration and standardization of plant RNA editing factors (editosome) and the related ... Show Details...
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Database maintenance site: Huazhong University of Science and Technology, University of Texas Health Science Center at Houston
Organism(s) covered: Homo sapiens
Description: Pancan-meQTL is a database for systematically prediction about the effects of SNPs on methylation levels of human genome. It provides cis-meQTLs (SNPs affect local methylation l... Show Details...
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Database maintenance site: Université de Sherbrooke
Organism(s) covered: Homo sapiens | Mus musculus | Rattus norvegicus |
Pan troglodytes
| Danio rerio | ...
Description: OpenProt is a database that enforces a polycistronic model of eukaryotic genome annotations. It annotates known proteins (RefProts), novel predicted isoforms (Isoforms) and nove... Show Details...
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Database maintenance site: Peking University Cancer Hospital and Institute, Chinese Academy of Sciences, University of Michigan
Organism(s) covered: Homo sapiens
Description: OncoBase is an integrated database for annotating somatic mutations from more than 120 cancer projects. Data are collected from TCGA, ICGC, COSMIC and ClinVar.It provides compre... Show Details...
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Database maintenance site: BIG Data Center, Beijing Institute of Genomics, Chinese Academy of Sciences
Organism(s) covered: Arabidopsis thaliana | Caenorhabditis elegans | Candida albicans | Danio rerio | Drosophila melanogaster | ...
Description: NucMap is a database about genome-wide nucleosome positioning map of organisms. The nucleosome positioning information is provided by a single nucleotide resolution in every org... Show Details...
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Database maintenance site: Cancer Science Institute of Singapore
Organism(s) covered: Homo sapiens | Mus musculus
Description: MethMotif is an integrative database of transcription factor binding motifs coupled with DNA methylation profiles using the results of ChIP-seq and Whole Genome Bisulfite Sequen... Show Details...
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Database maintenance site: SBCB Unit, Department of Biochemistry, University of Oxford
Organism(s) covered: All
Description: MemProtMD is a database about intrinsic membrane protein structures derived from Protein Data Bank, which inserted into simulated lipid bilayers using Coarse-Grained Self Assemb... Show Details...
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Database maintenance site: Computational Epigenomics Lab, Evolutionary Genomics and Bioinformatics Group, Dept. of Genetics, Inst. of Biotechnology, University of Granada
Organism(s) covered: Homo sapiens
Description: LipDB is a database about small RNA sequencing profiles in liquid biopsy studies. All data in this database were acquired from SRA database, and users can browse a list of studi... Show Details...
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Database maintenance site: Icahn School of Medicine at Mount Sinai
Organism(s) covered: All
Description: KinaMetrix is a database to investigate kinase conformations and inhibitor space. It contains the geometric descriptors describing kinase conformation, and the information of li... Show Details...
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Database maintenance site: National Genomics Data Center, Beijing Institute of Genomics, Chinese Academy of Sciences
Organism(s) covered: Canidae
Description: iDog is an integrated resource for domestic dog (Canis lupus familiaris) and wild canids. It includes information about Genes, Genomes, SNPs, Breed/Disease Traits, Gene Expressi... Show Details...
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Database maintenance site: University of Bari
Organism(s) covered: Homo sapiens
Description: HmtVar is a manually-curated database for variability and pathogenicity information about human mtDNA. It collects variation data from HmtDB (https://www.hmtdb.uniba.it), which ... Show Details...
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Database maintenance site: Vanderbilt University Medical Center
Organism(s) covered: Homo sapiens
Description: HACER is a database of human active enhancer to interpret regulatory variants, which includes active, transcribed enhancers derived from GRO-seq, PRO-seq and CAGE data. It provi... Show Details...
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Database maintenance site: Chinese Academy of Sciences
Organism(s) covered: Bacteria | Archaea
Description: gcMeta is an integrated platform for microbiome research. It contains information and data about microbiome research studies, such as study name, project ID, descriptions, sampl... Show Details...
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Database maintenance site: University of Texas Health Science Center at Houston
Organism(s) covered: Homo sapiens
Description: FusionGDB is a database about fusion gene annotation. This database collects data of clinically relevant fusion genomes from three representative fusion gene resources: the impr... Show Details...
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Database maintenance site: Harbin Medical University
Organism(s) covered: Homo sapiens
Description: EWASdb is a comprehensive database for epigenome-wide association studies (EWAS). Users can search studies by information of single epi-marker used in studies, KEGG pathway and ... Show Details...
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Database maintenance site: National Genomics Data Center, Beijing Institute of Genomics, Chinese Academy of Sciences
Organism(s) covered: Homo sapiens
Description: EWAS Atlas is an integrated database focusing on DNA methylation which is one of the key epigenetic marks. It contains manually curated data of EWAS knowledge from extensive pub... Show Details...
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Database maintenance site: College of Life Science and Technology, HUST
Organism(s) covered: Homo sapiens
Description: EVmiRNA is a comprehensive database of miRNA in extracellular vesicles. It provides miRNA expression profiles, miRNA related drug, miRNA regulated pathways, miRNA function and r... Show Details...
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Database maintenance site: The Encyclopedia of Traditional Chinese Medicine
Organism(s) covered: Embryophyta
Description: ETCM is a comprehensive database for the commonly used herbs and traditional Chinese medicines (TCMs). It provides information of material plants, such as Chinese name, scientif... Show Details...
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Database maintenance site: School of Life Sciences, The Chinese University of Hong Kong
Organism(s) covered: Eukaryota
Description: ENPD is a database for nucleic acid binding proteins (NBPs) and their functional information. It contains information of NBPs (DNA binding proteins: DBPs, RNA-binding proteins: ... Show Details...
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Database maintenance site: VIB-KU Leuven Center for Cancer Biology (CCB)
Organism(s) covered: Homo sapiens | Mus musculus | Danio rerio | Rattus norvegicus | Bos taurus | ...
Description: EndoDB is an expert curated added-value database of publicly available endothelial (single) cell gene expression data. It collects endothelial transcriptomics datasets including... Show Details...
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Database maintenance site: Japan Science and Technology Agency National Bioscience Database Center
Organism(s) covered: Bombyx mori
Description: This is a collection of tissue specific transcriptomic data for Bombyx mori. RNAseq was applied for multiple tissues in Bombyx mori P50T strain using new reference genome data. ... Show Details...
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Database maintenance site: National Institute of Neurological Disorders & Stroke
Organism(s) covered: All
Description: EncoMPASS is a database for relating integral membrane proteins from the points of view of their sequence, structure, and quaternary and internal symmetries. Analysis was done f... Show Details...
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Database maintenance site: National Genomics Data Center, Beijing Institute of Genomics, Chinese Academy of Sciences
Organism(s) covered: Homo sapiens | Viruses
Description: EDK is a curated knowledgebase of associations between abnormal RNA modifications and human diseases. It provides comprehensive integration of knowledge on abnormal RNA editing ... Show Details...
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Database maintenance site: Arieh Warshel Institute of Computational Biology, The Chinese University of Hong Kong
Organism(s) covered: Archaea | Bacteria | Fungi | Embryophyta | Homo sapiens | ...
Description: dbAMP is a database of anti-microbial peptides (AMPs) which are naturally encoded by genes and generally containing 12-100 amino acids. It provides information of antibacterial ... Show Details...
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Database maintenance site: Beijing Institute of Genomics, Chinese Academy of Sciences
Organism(s) covered: Homo sapiens | Mus musculus
Description: DSMNC is a comprehensive catalogue of somatic single nucleotide variations (SNVs) occurring in a normal cell from various human and mouse normal tissues. Each entry contains chr... Show Details...
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Database maintenance site: Xishuangbanna Tropical Botanical Garden, Chinese Academy of Sciences
Organism(s) covered: Homo sapiens | Mus musculus | Rattus norvegicus | Sus scrofa | Oryctolagus cuniculus | ...
Description: CRISPRlnc is a manually curated database of validated CRISPR/Cas9 sgRNAs for lncRNAs. The ID, position in the genome, sequence and functional description of these lncRNAs, as we... Show Details...
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Database maintenance site: University of Lausanne
Organism(s) covered: Euteleostomi
Description: CoevDB is a database of intramolecular coevolution among over 8,000 protein-coding genes of the bony vertebrates (Euteleostomi clade). Prediction of coevolution can be obtained ... Show Details...
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Database maintenance site: National University of Singapore
Organism(s) covered: Viridiplantae | Homo sapiens
Description: The CMAUP database provides collective molecular activities of useful plants (e.g. medicinal and food plants). Data are manually collected from literatures or from other related... Show Details...
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Database maintenance site: University of Miami Miller School of Medicine
Organism(s) covered: Homo sapiens | Mus musculus | Rattus norvegicus | Danio rerio | Schizosaccharomyces pombe | ...
Description: ChIPprimersDB is a public repository of verified qPCR primers for chromatin immunoprecipitation (ChIP). All primers listed are published in peer-reviewed manuscripts and a repor... Show Details...
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Database maintenance site: Kunming Institute of Zoology, Chinese Academy of Sciences
Organism(s) covered: Tupaia belangeri
Description: Tree Shrew Database is a knowledge base for Chinese tree shrew genome biology. It provides a comprehensive annotation for reference genome of the Chinese tree shrew, gene expres... Show Details...
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Database maintenance site: Wellcome Sanger Institute
Organism(s) covered: Homo sapiens
Description: The Cell Model Passports provides access to a cancer cell line and organoid model database containing curated patient, sample and model relationship information as well as genom... Show Details...