List of Database Records  (records : )

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Database maintenance site: Center for Medical Genetics, Keio University School of Medicine
Organism(s) covered: Homo sapiens
Description: DPV provides information on germline pathogenic mutations in the Japanese population. The data of mutations were curated from published papers regarding Japanese patients with r... Show Details...
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Database maintenance site: The Japanese Environmental Mutagen Society (JEMS)
Organism(s) covered: Homo sapiens | Bacteria | Salmonella Typhimurium | Escherichia coli | Drosophila | ...
Description: The MUTANTS is a database of compounds (including natural substances) which have been tested for their mutagenicity (genotoxicity) by the systems of different genetic end-points... Show Details...
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Database maintenance site: RADDAR-J
Organism(s) covered: Homo sapiens
Description: The RADDAR-J site was constructed for consolidating and supporting registry studies about intractable diseases covered by the Practical Research Project for Rare/Intractable Dis... Show Details...
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Database maintenance site: Neotoma Leadership Council
Organism(s) covered: Spermatophyta | Vertebrata | Bacillariophyta | Ostracoda | Insecta | ...
Description: The Neotoma Paleoecology Database is a community-curated data repository for paleoecological data spanning the last 5 million years. Data currently include fossil pollen, mammal... Show Details...
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Database maintenance site: National Museum of Nature and Science
Organism(s) covered: Tracheophyta
Description: "Global Red List of Japanese Threatened Plants" provides information of threatened vascular plants from national or regional red lists of China, Japan, South Korea, East Russia ... Show Details...
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Database maintenance site: Research Organization of Information and Systems, National Institute of Genetics, TEC group
Organism(s) covered: Escherichia coli
Description: TEC database provides the regulatory targets for all sigma factors and transcription factor (TF)s in E. coli identified by genomic SELEX screening. Users can search either TFs t... Show Details...
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Database maintenance site: The University of Tokyo, Forestry and Forest Products Research Institute, Hokkaido Research Organization, Meiji University
Organism(s) covered: Abies sachalinensis
Description: TodoFirGene is a transcriptome database for Abies sachalinensis. It provides gene expression data in the female flower, male flower, young leaf and inner bark, and gene annotati... Show Details...
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Database maintenance site: Department of Biomolecular Science, Faculty of Science, Toho University
Organism(s) covered: Homo sapiens
Description: This database provides the constitutive androstane receptor (CAR) binding sites in the human genome identified by a modified yeast one-hybrid system, and the experimentally vali... Show Details...
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Database maintenance site: Department of Biomolecular Science, Faculty of Science, Toho University
Organism(s) covered: Homo sapiens
Description: This database provides the retinoid X receptor (RXR) binding sites in the human genome identified by a modified yeast one-hybrid system, and the experimentally validated regulat... Show Details...
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Database maintenance site: Kyoto University Institute for Chemical Research Bioinformatics Center
Organism(s) covered: Bacteria | Archaea | Viruses | Eukaryota
Description: Virus-Host DB is a database about the relationships between viruses and their hosts. It provides information of the relationships represented in the form of pairs of NCBI taxono... Show Details...
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Database maintenance site: Kazusa DNA Research Institute
Organism(s) covered: Allium cepa | Allium cepa var. aggregatum | Allium roylei | Allium fistulosum
Description: AlliumTDB is a database for transcriptomic data by RNA-Seq about Allium sp. Each entry contains sequence data, expression profile, BLAST annotations using TAIR, IRGSP or NCBI, a... Show Details...
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Database maintenance site: Tohoku University Graduate School of Information Sciences
Organism(s) covered: Chlamydomonas reinhardtii | Cyanidioschyzon merolae
Description: ALCOdb is a gene coexpression database for microalgae. It provides gene coexpression data about two unicellular microalgae: a green alga Chlamydomonas reinhardtii and a red alga... Show Details...
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Database maintenance site: Nagahama Institute of Bio-Science and Technology
Organism(s) covered: Homo sapiens
Description: Mutation@A Glance is an integrated database for genetic variations including disease-causing mutations, cancer-related mutations and natural variants in human genes. It includes... Show Details...
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Database maintenance site: Nagao Natural Environment Foundation
Organism(s) covered: Chondrichthyes | Actinopterygii | Lepidosauria | Amphibia | Decapoda | ...
Description: FiMSeA is a database about fishes of the mainland Southeast Asia. It contains information of fish specimens (Taxon, DNA information, Specimen preserved institute, Sampling locat... Show Details...
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Database maintenance site: Kazusa DNA Research Institute
Organism(s) covered: Fagopyrum esculentum
Description: BGDB is a genome database for Buckwheat. It provides a draft assembly sequence of the genome using short reads obtained by NGS, and information of predicted genes with annotatio... Show Details...
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Database maintenance site: Medical Mycology Research Center, Chiba University
Organism(s) covered: Fungi | Actinobacteria
Description: This is a catalog about strains of pathogenic fungi and actinomycetes isolated or stocked at the Medical Mycology Research Center, Chiba University. Each entry contains scientif... Show Details...
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Database maintenance site: National Institute for Basic Biology
Organism(s) covered: Archaea | Bacteria | Apicomplexa | Mycetozoa | Fungi | ...
Description: RECOG is a workbench software program using the MBGD (Microbial Genome Database for Comparative Analysis) data, which is used to conduct comparative genome analyses on a massive... Show Details...
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Database maintenance site: RIKEN Center for Sustainable Resource Science
Organism(s) covered: Arabidopsis thaliana
Description: AtMetExpress LC-MS is a phytochemical atlas of Arabidopsis thaliana. Here, following two datasets are available; a dataset for phytochemical accumulation of many developmental s... Show Details...
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Database maintenance site: JT Biohistory Research Hall
Organism(s) covered: Parasteatoda tepidariorum | Ligia exotica | Caridina multidentata | Hexapoda | Viridiplantae
Description: This site is a portal site of data resources provided by the JT Biohistory Research Hall. It contains following databases: Pt_spiderBASE (a collection of nucleotide sequences fr... Show Details...
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Database maintenance site: United Centers for Advanced Research and Translational Medicine, Tohoku University Graduate School of Medicine
Organism(s) covered: Homo sapiens
Description: This site provides pdbBAM files those are binary sequence alignment/mapping (BAM) formatted file, in which proteins in Protein Data Bank (PDB) are represented in their positions... Show Details...
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Database maintenance site: International Institute of Molecular and Cell Biology in Warsaw
Organism(s) covered: Homo sapiens | Escherichia coli | Saccharomyces cerevisiae
Description: REPAIRtoire is a database for DNA damage and repair. The database contains the following types of information: 1) DNA damage linked to environmental mutagenic and cytotoxic agen... Show Details...
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Database maintenance site: Soka University Faculty of Science and Engineering
Organism(s) covered: Bacteria | Fungi | Homo sapiens | Mus musculus | Rattus norvegicus | ...
Description: MCAW-DB is a database whereby users can view the multiple alignment analysis results obtained from the Multiple Carbohydrate Alignment with Weights (MCAW) tool.The database prov... Show Details...
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Database maintenance site: Kyoto University Institute for Chemical Research Bioinformatics Center
Organism(s) covered: Viridiplantae
Description: PCIDB is a database to elucidate therapeutic effect of plants on human. It provides integrated data from KNApSAcK, ChEMBL, CTD, OMIM and KEGG DISEASE. Users can search data by K... Show Details...
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Database maintenance site: National Bioscience Database Center, Research Organization of Information and Systems Database Center for Life Science
Organism(s) covered: Homo sapiens
Description: TogoVar (NBDC's integrated database of Japanese genomic variation) is a database that has collected and organized genome sequence differences between individuals (variants) in t... Show Details...
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Database maintenance site: LPixel Inc.
Organism(s) covered:
Description: This is a collection of miscellaneous plugins for ImageJ that is an open source image processing program designed for scientific multidimensional images. Show Details...
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Database maintenance site: Soka University Faculty of Science and Engineering
Organism(s) covered:
Description: RINGS is a freely available Web resource for academic glycobiologists to analyze their data using the latest data mining and algorithmic techniques. It provides a number of tool... Show Details...
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Database maintenance site: Bioinformation and DDBJ Center, National Institute of Genetics, Research Organization of Information and Systems
Organism(s) covered:
Description: WABI is a web API for using the search services of the DNA Data Bank of Japan (DDBJ) without needing to navigate the web front-end. WABI currently provides the following web API... Show Details...
Database maintenance site: Computational Epigenomics Lab, Evolutionary Genomics and Bioinformatics Group, Dept. of Genetics, Inst. of Biotechnology, University of Granada
Organism(s) covered: Homo sapiens | Mus musculus | Arabidopsis thaliana | Pan troglodytes | Rhesus macaque | ...
Description: NGSmethDB is a database for whole genome methylomes generated from short-read data sets obtained by bisulfite sequencing (WGBS) technology. Publicly available short-read data se... Show Details...
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Database maintenance site: Bioinformatics Laboratory, Department of Life Sciences, School of Agriculture, Meiji University
Organism(s) covered: Arabidopsis thaliana | Oryza sativa
Description: PlantExpress is a platform for gene expression network (GEN) analysis with the public microarray data of rice and Arabidopsis. For a single-species GEN analysis, PlantExpress pr... Show Details...
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Database maintenance site: The University Museum The University of Tokyo
Organism(s) covered: Aceraceae | Adoxaceae | Annonaceae | Aquifoliaceae | Araceae | ...
Description: This is a database of type specimens of species and infraspecific taxa of the plant families preserved in the Herbarium, Department of Botany, the University Museum, the Univers... Show Details...
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Database maintenance site: Max Planck Institute for Informatics
Organism(s) covered: Homo sapiens
Description: DeepBlue provides a programmatic interface for finding, selecting, filtering, summarizing and downloading epigenomic data from the main epigenome mapping projects: ENCODE, NIH R... Show Details...
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Database maintenance site: RIKEN
Organism(s) covered: Oryzias
Description: This database provides metadata of the NBRP medaka database ( https://integbio.jp/dbcatalog/en/record/nbdc00147 ). Data on this site are available as downloadable RDF files and ... Show Details...
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Database maintenance site: Japan Science and Technology Agency National Bioscience Database Center
Organism(s) covered:
Description: PURL is a server for Persistent Uniform Resource Locators (URLs). On this site, users allows to create and register a persistent URL which is an address on the World Wide Web th... Show Details...
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Database maintenance site: Medical Mycology Research Center (MMRC), Chiba University
Organism(s) covered: Fungi | Actinobacteria | Amoeba | Babesia | Blastocystis | ...
Description: National Bioresource Project - 'Pathogenic eukaryotic microorganisms' collects reliable strains of pathogenic microorganisms (fungi, actinomycetes and protozoa) to support educa... Show Details...
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Database maintenance site: Center for Conservation of Microbial Genetic Resource (GCMR), Organization for Research and Community Development, Gifu University
Organism(s) covered: Bacteria
Description: National Bioresource Project - 'Pathogenic bacteria' collects reliable strains of pathogenic bacteria to support education and research in infectious diseases. Users can search ... Show Details...
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Database maintenance site: National Institute of Advanced Industrial Science and Technology
Organism(s) covered: Arabidopsis thaliana | Dianthus caryophyllus | Cyclamen persicum | Chrysanthemum morifolium | Eustoma exaltatum subsp. Russellianum | ...
Description: This database provides information of phenotype in transgenic plants created by CRES-T (Chimeric REpressor gene-Silencing Technology) system which is a novel gene silencing tech... Show Details...
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Database maintenance site: J. Craig Venter Institute (JCVI)
Organism(s) covered: Medicago truncatula
Description: This is the genome database for Medicago truncatula, a model legume. It currently hosts the latest version of the genome assembly and annotation. It provides keyword- and locus ... Show Details...
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Database maintenance site: Nara Institute of Science and Technology
Organism(s) covered:
Description: CobWeb is a database of alkaloid pathways. Users can browse pathways from the pathway map ID list. Pathway map ID(s) or object(s) in each map is/are highlighted when user input ... Show Details...
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Database maintenance site: Nara Institute of Science and Technology
Organism(s) covered:
Description: "Twins" retrieves similar metabolites in chemical structure when user input KNApSAcK CID and Similarity (%). Resulting CID links to KNApSAcK Core database and KNApSAcK Metabolit... Show Details...
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Database maintenance site: National Key Laboratory of Crop Genetic Improvement, Huazhong Agricultural University
Organism(s) covered: Oryza sativa
Description: RiceVarMap v2.0 is a comprehensive database for rice genomic variation and its functional annotation. It provides curated information of 17,397,026 genomic variations (including... Show Details...
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Database maintenance site: Barts Cancer Institute
Organism(s) covered: Homo sapiens | Mus musculus
Description: PED is a repository for pancreatic-derived -omics data. The database provides the research community with an open access tool to mine currently available pancreatic cancer exper... Show Details...
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Database maintenance site: Structural Bioinformatics Group, National University of Quilmes
Organism(s) covered: Bacteria | Eukaryota | Archaea | Viroids | Viruses
Description: CoDNaS is a database of redundant crystallographic structures for a given protein extensively linked with structural, biological and physicochemical information. For each protei... Show Details...
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Database maintenance site: International Rice Research Institute
Organism(s) covered: Oryza sativa
Description: Rice SNP-Seek Database provides Genotype, Phenotype, and Variety Information for rice (Oryza sativa L.). The main functionalities are query for SNPs and Indels from the 3000 Gen... Show Details...
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Database maintenance site: Japan Council for Quality Health Care
Organism(s) covered: Homo sapiens
Description: This service provides information to medical professionals and patients on relevant treatment therapy options that are sufficiently supported by scientific evidence so the best ... Show Details...
Database maintenance site: National Bioscience Database Center
Organism(s) covered:
Description: This is a collection of user dictionaries of Japanese technical terms in scientific field, which can be used for a morphological analysis engine, MeCab. It consists of the JST... Show Details...
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Database maintenance site: Kyoto University Institute for Chemical Research Bioinformatics Center
Organism(s) covered: Homo sapiens
Description: KEGG NETWORK accumulates variations of molecular interaction/reaction networks in Homo sapiens distinguishing gene variants and other perturbants. Each entry is called "network ... Show Details...
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Database maintenance site: Kyoto University Graduate School of Medicine
Organism(s) covered: Homo sapiens
Description: Medical Genomics Japan Variant Database (MGeND) provides the integrated information of genomic variations and clinical characteristics of Japanese. Gene and clinical information... Show Details...
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Database maintenance site: RIKEN Center for Sustainable Resource Science
Organism(s) covered:
Description: Computational metabolomics is a collection about computational tools for metabolomics. It contains MS-DIAL, MS-FINDER, MRMPROBS, MRM-DIFF, SmetSearch, Cuated EI-MS and MS/MS dat... Show Details...
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Database maintenance site: Harvard Medical School, Stanley Center for Psychiatric Research at Broad Institute
Organism(s) covered: Mus musculus
Description: DropViz provides the Drop-seq data of single-cell RNA sequencing of 690,000 cells sampled from nine regions of the adult mouse brain. Users can visualize and re-analyze these ge... Show Details...
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Database maintenance site: Research Organization of Information and Systems Database Center for Life Science
Organism(s) covered: Homo sapiens
Description: PubCaseFinder is a database of human disease-phenotype associations which employs a text mining-based approach to improve the coverage of Orphanet. It contains more than one mil... Show Details...