RNAapt3D
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| Alternative name: | - |
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| Database maintenance site: | AIST (National Institute of Advanced Industrial Science and Technology) (Link to J-Global) |
| Country/Region: | Japan |
| Database description: | RNAapt3D is a database of RNA aptamer which contains RNA sequences, their secondary/tertiary structural information, target proteins of RNA aptamers and network of RNA-protein interaction. The tertiary structures are predicted by a given RNA sequence considering a wide variety of secondary structures with a modelling tool, RASCAL, and molecular dynamics simulations. This database can be used to provide insights for tertiary structural analysis, motif search with base flip position and a starting point by RNA-protein complex molecular simulations. This database facilitates a study on the design of RNA aptamer for a target molecule and improves the efficiency and the productivity in candidate selection. |
| Organism(s) covered: | |
| Tag - Target: | RNA, Protein, Drug |
| Tag - Information type: | Sequence, 3D structure, Interaction/Pathway |
| Reference(s) - PubMed ID/DOI: | PubMed ID: DOI: |
| Language(s): | English |
| Operational status: | Active |
| Link(s) to Downloadable data: | - |
| Link(s) to Metadata of downloadable data: | - |
| Link(s) to Terms of use: | - |
| Link(s) to "How to use": | - |
| Contact information of database: | - |
| Link(s) to API / SPARQL endpoint | - |
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Link to LSDB Archive:
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Link to MEDALS Database list:
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Link to TogoTV:
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Link to FAIRsharing:
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Similar databases:
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SRPDB RNAct RNAJunction: A Database of RNA Junction and Kissing loop Structure tmRDB BindingDB database of measured binding affinities Pocketome: an encyclopedia of small-molecule binding sites in 4D Noncoding RNA database LncACTdb 3.0 dbAMP RNA Characterization of Secondary Structure Motifs |
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Record maintainer
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Integbio Database Catalog |
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Record source:
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Date of creation of this record:
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2022-11-18 |
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Last update date of this record:
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2023-09-28 |
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Record license:
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Creative Commons CC0 license |