VISDB: Viral Integration Site DataBase
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| Database maintenance site: | UTHealth (University of Texas Health Science Center at Houston) |
| Country/Region: | United States |
| Database description: | VISDB is a knowledgebase of site-related information about viruses integrated into human genome. It covers 9 main viruses, including 5 DNA oncoviruses (HBV, HPV, EBV, MCV, AAV2) and 4 RNA retroviruses (HIV, MLV, HTLV, XMRV). Each entry is carefully curated from publications and includes information for fusion event, validated (yes or no), detection method, sample type (tumor or nontumor), disease, quality evaluation, virus sequence, host sequence, miRNAs for regulate target gene, upstream and downstream sequences, etc. |
| Organism(s) covered: | , , , , , , , , |
| Tag - Target: | Genome/Gene, Genetic variation, RNA, Health/Disease |
| Tag - Information type: | Sequence, Interaction/Pathway |
| Reference(s) - PubMed ID/DOI: | PubMed ID: DOI: |
| Language(s): | English |
| Operational status: | Active |
| Link(s) to Downloadable data: | https://bioinfo.uth.edu/VISDB/index.php/download |
| Link(s) to Metadata of downloadable data: | - |
| Link(s) to Terms of use: | - |
| Link(s) to "How to use": | https://bioinfo.uth.edu/VISDB/public/archives/Manual.pdf?csrt=10859936412756757940 |
| Contact information of database: | https://bioinfo.uth.edu/VISDB/index.php/help?csrt=10859936412756757940#contact-us-page |
| Link(s) to API / SPARQL endpoint | - |
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Link to LSDB Archive:
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Link to MEDALS Database list:
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Link to TogoTV:
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Link to FAIRsharing:
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Similar databases:
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VIRsiRNAdb miRNEST LncBook GatVirus Database Ebola and Hemorrhagic Fever Virus Database SyntDB LncACTdb 3.0 EDK Cancer Genome Mine Viral Probe Database |
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Record maintainer
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Integbio Database Catalog |
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Record source:
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Date of creation of this record:
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2022-04-13 |
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Last update date of this record:
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2022-04-13 |
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Record license:
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Creative Commons CC0 license |