PreDom
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| Database name: | |
| Alternative name: | - |
| URL: | |
| Database maintenance site: | Nagahama Institute of Bio-Science and Technology (Link to J-Global) |
| Country/Region: | Japan |
| Database description: | PreDom is a database and related prediction services about domain-domain interfaces. It consists of following sections: PreDom:DiD is a database of domain-domain interface which used information of structural domains defined in SCOP or CATH database. It contains amino acid sequence, domain-domain interaction residue and interactive 3D image with JSmol. PreDom:Interface predicts domain-domain interaction residues from the 3D structure of domain. Domain interface residues are predicted by two algorithm; KIP and IP. PreDom:Structure predicts 3D structure about multi-domain protein using 3D structure of each domain. PreDom:Evtrace predicts functional sites of a protein on the basis of phylogenetic and structural information. |
| Organism(s) covered: | - |
| Tag - Target: | Protein |
| Tag - Information type: | Sequence, 3D structure, Interaction/Pathway |
| Reference(s) - PubMed ID/DOI: | - |
| Language(s): | Japanese, English |
| Operational status: | Active |
| Link(s) to Downloadable data: | - |
| Link(s) to Metadata of downloadable data: | - |
| Link(s) to Terms of use: | - |
| Link(s) to "How to use": | - |
| Contact information of database: | https://harrier.nagahama-i-bio.ac.jp/domain/mail.php?lang=en |
| Link(s) to API / SPARQL endpoint | - |
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Link to LSDB Archive:
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Link to MEDALS Database list:
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Link to TogoTV:
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Link to FAIRsharing:
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Similar databases:
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Structure, Interfaces and Alignments for Protein-Protein Interactions Database 3D interacting domains PiSITE WCPDB PASS2 PIR SuperFamily HotRegion EncoMPASS DOMMINO: A comprehensive database of macromolecular interactions Agile Protein Interactomes Dataserver |
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Record maintainer
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Integbio Database Catalog |
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Record source:
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Date of creation of this record:
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2024-03-22 |
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Last update date of this record:
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2024-03-22 |
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Record license:
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Creative Commons CC0 license |