EncoMPASS: Encyclopedia of Membrane Proteins Analyzed by Structure and Symmetry
|National Institute of Neurological Disorders & Stroke|
|EncoMPASS is a database for relating integral membrane proteins from the points of view of their sequence, structure, and quaternary and internal symmetries. Analysis was done for all membrane-spanning PDB entries and separately for all membrane-spanning chains found therein in terms of the relationships between integral membrane proteins using structural and sequence similarity, and the symmetry of integral membrane proteins structures. It contains;|
1) General information about the complete biological unit of each membrane protein structure.
2) A list of chains contained in the biological unit and their relationships to other structures in the database.
3) Raw output from two symmetry detection programs: CE-Symm and SymD.
4) Consensus results from processing with SymD and CE-Symm with default and customized parameters.
|Sequence, 3D structure, Interaction/Pathway|