PyDISH: Python-based database & analyzer for DIStortion of Heme porphyrin
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| Database maintenance site: | Hiroshima City University (Link to J-Global) |
| Country/Region: | Japan |
| Database description: | PyDISH is a database of heme porphyrin structures. Each entry is composed of one heme molecule liganded to a hemeprotein and includes information for the heme, axial ligands and information about them, protein function, orientation of propionate sidechains, structural resolution, and deposition date. It allows to search using browser with distortion of porphyrin and its axial ligands are displayed. PyDISH also provides several analytic tools for investigating the correlation between the distortion of heme and the axial ligands or protein function. |
| Organism(s) covered: | - |
| Tag - Target: | Protein |
| Tag - Information type: | Chemical structure, 3D structure, Image/Movie |
| Reference(s) - PubMed ID/DOI: | PubMed ID: DOI: |
| Language(s): | English |
| Operational status: | Active |
| Link(s) to Downloadable data: | - |
| Link(s) to Metadata of downloadable data: | - |
| Link(s) to Terms of use: | - |
| Link(s) to "How to use": | https://pydish.bio.info.hiroshima-cu.ac.jp/help/#4 |
| Contact information of database: | https://pydish.bio.info.hiroshima-cu.ac.jp/help/#5 |
| Link(s) to API / SPARQL endpoint | - |
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Link to LSDB Archive:
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Link to MEDALS Database list:
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Link to TogoTV:
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Link to FAIRsharing:
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Similar databases:
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FireDB Knottin database AffinDB 3DinSight European Hepatitis C Virus database KNApSAcK MetalMine TMPad PDBsum HHDB EM Navigator |
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Record maintainer
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Integbio Database Catalog |
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Record source:
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Date of creation of this record:
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2024-03-22 |
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Last update date of this record:
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2024-03-22 |
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Record license:
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Creative Commons CC0 license |