Factorbook
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| Database name: | |
| Alternative name: | - |
| URL: | |
| Database maintenance site: | University of Massachusetts Medical School |
| Country/Region: | United States |
| Database description: | Factorbook is a transcription factor (TF)-centric wiki-style repository of all ENCODE ChIP-seq datasets on TF-binding regions, as well as the rich analysis results of these data. That organizes all the information associated with each TF, including the ChIP-seq peaks, discovered motifs, TF-TF interactions, and the chromatin features (histone modification patterns, DNase I cleavage, and nucleosome positioning) around the ChIP-seq peaks. The main page displays an alphabetized matrix of TFs and cell lines. Clicking the TF name opens the individual page on the TF. Factorbook is planned to update whenever more ENCODE data are available. |
| Organism(s) covered: | , |
| Tag - Target: | Genome/Gene, Epigenetics, DNA, Protein |
| Tag - Information type: | Sequence, Expression, Interaction/Pathway |
| Reference(s) - PubMed ID/DOI: | PubMed ID: DOI: PubMed ID: DOI: |
| Language(s): | English |
| Operational status: | Active |
| Link(s) to Downloadable data: | - |
| Link(s) to Metadata of downloadable data: | - |
| Link(s) to Terms of use: | - |
| Link(s) to "How to use": | - |
| Contact information of database: | - |
| Link(s) to API / SPARQL endpoint | - |
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Link to LSDB Archive:
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Link to MEDALS Database list:
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Link to TogoTV:
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Link to FAIRsharing:
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Similar databases:
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MethMotif SwissRegulon FlyFactorSurvey TEC database YPA NGS-QC ChIP-Atlas ReMap Genome Network Platform PRODORIC |
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Record maintainer
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Integbio Database Catalog |
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Record source:
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Date of creation of this record:
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2020-03-10 |
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Last update date of this record:
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2020-03-10 |
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Record license:
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Creative Commons CC0 license |