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NGS-QC:  Next Generation Sequencing Quality Control Generator

info ID: NBDC02505
info Database name: NGS-QC
info Alternative name: Next Generation Sequencing Quality Control Generator
info URL: 
info Database maintenance site: Institute of Genetics and Molecular and Cellular Biology
info Country/Region: France
info Database description: NGS-QC database is the first QC indicator database covering the largest collection of ChIP-seq and enrichment-related NGS datasets. Most of the current certified entries are part of the public repository GEO. Database can be searched based on Organism, Target Molecule, QC grade, etc. A scatter plot provides the user a summary and exact range of the quality descriptors of all the experiments that come under their searched queries.
Users can evaluate the quality of their own NGS dataset relative to the datasets present in the entire database through the Galaxy platform instance NGS-QC Generator.
Other tools like LOGIQA hosting quality scores for long-range genome interaction assays (e.g. Hi-C), and QC Genomics providing a central access to the largest collection of genomic data are also available.
info Organism(s) covered: Arabidopsis thaliana (), Caenorhabditis elegans (), Danio rerio (), Drosophila melanogaster (), Gallus gallus (), Homo sapiens (), Mus musculus (), Pan troglodytes (), Rattus norvegicus (), Saccharomyces cerevisiae ()
info Tag - Target: Genome/Gene, Epigenetics, DNA, RNA, Protein
info Tag - Information type: Expression, Interaction/Pathway
info Reference(s) - PubMed ID/DOI: 
PubMed ID:
24038469
DOI:
10.1093/nar/gkt829
PubMed ID:
26484107
DOI:
10.1016/j.gdata.2014.08.002
PubMed ID:
27008019
DOI:
10.1007/978-1-4939-3578-9_13
PubMed ID:
27335635
DOI:
10.12688/f1000research.7637.2
PubMed ID:
27185059
DOI:
10.1186/s12864-016-2642-1
info Language(s): English
info Operational status: Active
info Link(s) to Downloadable data: -
info Link(s) to Metadata of downloadable data: -
info Link(s) to Terms of use: -
info Link(s) to "How to use": http://www.ngs-qc.org/guidelines.php
info Contact information of database: contact[at]ngs-qc[dot]org
info Link(s) to API / SPARQL endpoint -
info Link to LSDB Archive: -
info Link to MEDALS Database list: -
info Link to TogoTV: -
info Link to FAIRsharing: -
info Similar databases: Factorbook
CistromeDB
Integrative Disease Omics Database (iDOx DB)
MethMotif
SwissRegulon
DAnCER
GeneProf
Araport
EWAS Atlas
piRBase
info Record maintainer Integbio Database Catalog
info Record source: integbio logo
info Date of creation of this record: 2020-03-10
info Last update date of this record: 2020-03-10
info Record license: Creative Commons CC0 license