Araport: Arabidopsis Information Portal
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| Database maintenance site: | JCVI (J. Craig Venter Institute), Texas Advanced Computing Center, The University of Texas at Austin, University of Cambridge |
| Country/Region: | United States |
| Database description: | Araport is an open-access online community resource for Arabidopsis research. It hosts the Araport11, updated Arabidopsis genome annotation from TAIR10. Araport offers two core web applications: ThaleMine for data mining and JBrowse for genome browsing. The site also hosts 'science apps,' that use dynamic web pages to present data obtained on-demand from third-party servers. The Araport11 data are also available by bulk download and web services. |
| Organism(s) covered: | |
| Tag - Target: | Genome/Gene, DNA, RNA, Protein |
| Tag - Information type: | Sequence, Expression, Interaction/Pathway, Portal |
| Reference(s) - PubMed ID/DOI: | PubMed ID: DOI: PubMed ID: DOI: PubMed ID: DOI: |
| Language(s): | English |
| Operational status: | Active |
| Link(s) to Downloadable data: | https://www.araport.org/downloads |
| Link(s) to Metadata of downloadable data: | https://www.araport.org/data/araport11 |
| Link(s) to Terms of use: | - |
| Link(s) to "How to use": | https://www.araport.org/thalemine/user-guide, https://www.araport.org/jbrowse/user-guide, https://www.araport.org/tutorials |
| Contact information of database: | araport[at]jcvi[dot]org |
| Link(s) to API / SPARQL endpoint | https://www.araport.org/api-explorer |
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Link to LSDB Archive:
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Link to MEDALS Database list:
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Link to TogoTV:
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- |
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Link to FAIRsharing:
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https://fairsharing.org/biodbcore-001076/ |
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Similar databases:
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Genome Sequence Archive GeneProf The UCSC Archaeal Genome Browser CistromeDB V. parahaemolyticus Genome Information ENPD Yeast Searching for Transcriptional Regulators and Consensus Tracking FANTOM5 Pseudomonas Genome Database V2 |
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Record maintainer
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Integbio Database Catalog |
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Record source:
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Date of creation of this record:
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2019-07-10 |
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Last update date of this record:
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2019-07-10 |
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Record license:
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Creative Commons CC0 license |