The UCSC Archaeal Genome Browser
 ID: | |
| Database name: | |
| Alternative name: | - |
| URL: | |
| Database maintenance site: | Department of Biomolecular Engineering, University of California Santa Cruz, Center for Biomolecular Science and Engineering, School of Engineering, University of California Santa Cruz, University of California |
| Country/Region: | United States |
| Database description: | The UCSC Archaeal Genome Browser is a window on the biology of more than 100 microbial species from the domain Archaea. Basic gene annotation is derived from NCBI Genbank/RefSeq entries, with overlays of sequence conservation across multiple species, nucleotide and protein motifs, non-coding RNA predictions, operon predictions, and other types of bioinformatic analyses. In addition, we display available gene expression data (microarray or high-throughput RNA sequencing). Direct contributions or notices of publication of functional genomic data or bioinformatic analyses from archaeal research labs are very welcome. |
| Organism(s) covered: | , |
| Tag - Target: | Genome/Gene, DNA, RNA, Organism |
| Tag - Information type: | Sequence, Expression, Interaction/Pathway |
| Reference(s) - PubMed ID/DOI: | PubMed ID: DOI: PubMed ID: DOI: PubMed ID: DOI: |
| Language(s): | English |
| Operational status: | Active |
| Link(s) to Downloadable data: | - |
| Link(s) to Metadata of downloadable data: | - |
| Link(s) to Terms of use: | - |
| Link(s) to "How to use": | - |
| Contact information of database: | - |
| Link(s) to API / SPARQL endpoint | - |
|
Link to LSDB Archive:
|
- |
|
Link to MEDALS Database list:
|
- |
|
Link to TogoTV:
|
- |
|
Link to FAIRsharing:
|
https://fairsharing.org/10.25504/FAIRsharing.12yd2z |
|
Similar databases:
|
microRNA.org doRiNA ENPD FANTOM5 Transmembrane Helices in Genome Sequences piRTarBase Araport RNAct Integrated Microbial Genomes |
|
Record maintainer
|
See the corresponding part in the FAIRsharing record. |
|
Record source:
|
 (2018-12-21)
|
|
Date of creation of this record:
|
2019-03-28 |
|
Last update date of this record:
|
2020-07-09 |
|
Record license:
|
Creative Commons Attribution and Share-alike (CC-BY-SA) International 4.0 license |