MethMotif
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| Database name: | |
| Alternative name: | - |
| URL: | |
| Database maintenance site: | Cancer Science Institute of Singapore |
| Country/Region: | Singapore |
| Database description: | MethMotif is an integrative database of transcription factor binding motifs coupled with DNA methylation profiles using the results of ChIP-seq and Whole Genome Bisulfite Sequencing (WGBS). The data in this database were originally downloaded from ENCODE and GEO. It is constructed with following parts; 1) Explore in Heatmap: Distribution of CG beta scores in factor peak regions 2) MethMotif Database: A two-dimensional database 3) MethMotif Batch Query: A tool implemented in MethMotif website, which allows users to study the occurrences of TFBSs and their respective DNA methylation states within a given list of genomic loci. |
| Organism(s) covered: | , |
| Tag - Target: | Genome/Gene, Epigenetics, DNA, Protein, Cell/Organelle |
| Tag - Information type: | Sequence, Interaction/Pathway |
| Reference(s) - PubMed ID/DOI: | PubMed ID: DOI: |
| Language(s): | English |
| Operational status: | Active |
| Link(s) to Downloadable data: | https://bioinfo-csi.nus.edu.sg/methmotif/release_notes/data_download.php |
| Link(s) to Metadata of downloadable data: | - |
| Link(s) to Terms of use: | - |
| Link(s) to "How to use": | https://bioinfo-csi.nus.edu.sg/methmotif/manual/index.php |
| Contact information of database: | https://bioinfo-csi.nus.edu.sg/methmotif/cite/index.php |
| Link(s) to API / SPARQL endpoint | - |
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Link to LSDB Archive:
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Link to MEDALS Database list:
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Link to TogoTV:
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Link to FAIRsharing:
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Similar databases:
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Factorbook SwissRegulon MethylomeDB iMETHYL ReMap NGS-QC IHEC Data Portal DeepBlue ChIP-Atlas FlyFactorSurvey |
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Record maintainer
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Integbio Database Catalog |
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Record source:
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Date of creation of this record:
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2019-11-05 |
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Last update date of this record:
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2021-06-03 |
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Record license:
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Creative Commons CC0 license |