ChIP-Atlas
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| Alternative name: | - |
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| Database maintenance site: | Kyushu University Graduate School of Medical Sciences (Link to J-Global), DBCLS (Database Center for Life Science, Research Organization of Information and Systems) (Link to J-Global) |
| Country/Region: | Japan |
| Database description: | ChIP-Atlas is an integrative database for visualizing and exploiting public ChIP-seq data. This database covers almost all public ChIP-seq data submitted to the SRA (Sequence Read Archives) in NCBI, DDBJ or ENA. ChIP-Atlas is composed of 4 main features; 1) Peak Browser It graphically visualizes protein bindings on given genomic loci with genome browser (IGV). 2) Target genes It predicts target genes bound by given transcription factors. 3) Colocalization It predicts partner proteins colocalizing with given transcription factors. 4) Enrichment Analysis It predicts proteins bound to given genomic loci and genes. |
| Organism(s) covered: | , , , , |
| Tag - Target: | Genome/Gene, Protein |
| Tag - Information type: | Interaction/Pathway |
| Reference(s) - PubMed ID/DOI: | PubMed ID: DOI: |
| Language(s): | English |
| Operational status: | Active |
| Link(s) to Downloadable data: | http://chip-atlas.org/peak_browser, http://chip-atlas.org/target_genes, http://chip-atlas.org/colo |
| Link(s) to Metadata of downloadable data: | https://github.com/inutano/chip-atlas/wiki |
| Link(s) to Terms of use: | - |
| Link(s) to "How to use": | - |
| Contact information of database: | - |
| Link(s) to API / SPARQL endpoint | - |
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Link to LSDB Archive:
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Link to MEDALS Database list:
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Link to TogoTV:
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Link to FAIRsharing:
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Similar databases:
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HOmo sapiens transcription factor COmprehensive MOdel COllection (HOCOMOCO) PINT ReMap CistromeDB MAPPER-2 Interologous Interaction Database Factorbook PTM-Switchboard GeneProf Molecular INTeraction database |
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Record maintainer
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Integbio Database Catalog |
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Record source:
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Date of creation of this record:
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2016-01-19 |
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Last update date of this record:
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2019-06-03 |
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Record license:
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Creative Commons CC0 license |