Inactive
(Over 14 days)
(Over 14 days)
PTM-Switchboard
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| Database name: | |
| Alternative name: | - |
| URL: | |
| Database maintenance site: | University of Pennsylvania |
| Country/Region: | United States |
| Database description: | PTM-Switchboard is a database of known cases of TF-PTMs affecting gene transcriptions. This database contains triplets of genes as a primary data type about the model organism S. cerevisiae (budding yeast). PTM-Switchboard stores triplets of genes as a primary data type such that the ability of one gene (the TF) to regulate a target gene is dependent on a third gene (the modifying enzyme). Currently, this database is populated with experimentally characterized examples of the Modifier-Transcription Factor-gene (MFG) triplets manually curated from the literature. Furthermore, it provides a framework for searching and analyzing the data, and also serve to benchmark computational methods for identifying novel MFG triplets. The entire 'Gold Set' of fully characterized and experimentally validated MFG triplets is available for download in a simple tab-delimited text format. |
| Organism(s) covered: | |
| Tag - Target: | Genome/Gene, Protein |
| Tag - Information type: | Interaction/Pathway |
| Reference(s) - PubMed ID/DOI: | PubMed ID: DOI: |
| Language(s): | English |
| Operational status: | Inactive |
| Link(s) to Downloadable data: | - |
| Link(s) to Metadata of downloadable data: | - |
| Link(s) to Terms of use: | - |
| Link(s) to "How to use": | - |
| Contact information of database: | - |
| Link(s) to API / SPARQL endpoint | - |
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Link to LSDB Archive:
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Link to MEDALS Database list:
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Link to TogoTV:
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Link to FAIRsharing:
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Similar databases:
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PINT MAPPER-2 HOmo sapiens transcription factor COmprehensive MOdel COllection (HOCOMOCO) ChIP-Atlas Death Domain Database Petri Net Pathways PPI view GENIES VirusMentha PRofils pour l'Identification Automatique du Metabolisme |
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Record maintainer
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Integbio Database Catalog |
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Record source:
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Date of creation of this record:
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2013-06-17 |
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Last update date of this record:
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2017-11-28 |
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Record license:
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Creative Commons CC0 license |