Closed
PGF-DB: Plant Gene Family Database
 ID: | |
| Database name: | |
| Alternative name: | |
| URL: | |
| Database maintenance site: | NARO (National Agriculture and Food Research Organization) (Link to J-Global) |
| Country/Region: | Japan |
| Database description: | PGF-DB is a database for analysis of gene families from Oryza sativa, Sorghum bicolor, Zea mays, and Arabidopsis thaliana. It contains more than ten thousands gene families constructed by the Markov clustering (MCL) method and the complete linkage method of BLASTP. The names of gene families are assigned based on the InterPro domains to associate the gene family names to their related gene functions. |
| Organism(s) covered: | , , , |
| Tag - Target: | Genome/Gene |
| Tag - Information type: | Sequence, Classification |
| Reference(s) - PubMed ID/DOI: | - |
| Language(s): | English |
| Operational status: | Closed |
| Link(s) to Downloadable data: | - |
| Link(s) to Metadata of downloadable data: | - |
| Link(s) to Terms of use: | - |
| Link(s) to "How to use": | - |
| Contact information of database: | - |
| Link(s) to API / SPARQL endpoint | - |
|
Link to LSDB Archive:
|
- |
|
Link to MEDALS Database list:
|
- |
|
Link to TogoTV:
|
- |
|
Link to FAIRsharing:
|
- |
|
Similar databases:
|
RARTF PROSITE GreenPhylDB: A phylogenomic database for plant comparative genomics PhylomeDB ASAP II ECRbase Hoppsigen Evola Genome Project of Symbiobacterium thermophilum SALAD Database |
|
Record maintainer
|
Integbio Database Catalog |
|
Record source:
|
|
|
Date of creation of this record:
|
2014-11-18 |
|
Last update date of this record:
|
2017-08-06 |
|
Record license:
|
Creative Commons CC0 license |