PhylomeDB
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| Database name: | |
| Alternative name: | - |
| URL: | |
| Database maintenance site: | CRG (Comparative Genomics Group) |
| Country/Region: | Spain |
| Database description: | PhylomeDB is a unique knowledge base providing public access to minable and browsable catalogues of pre-computed, genome-wide collections of annotated sequences, alignments and phylogenies (i.e. phylomes) of homologous genes, as well as to their corresponding phylogeny-based orthology and paralogy relationships. In addition, PhylomeDB trees and alignments can be downloaded for further processing to detect and date gene duplication events, infer past events of inter-species hybridization and horizontal gene transfer, as well as to uncover footprints of selection, introgression, gene conversion, or other relevant evolutionary processes in the genes and organisms of interests. The v5 release also represents a significant core data expansion, with the database providing access to 534 phylomes, comprising over 8 million trees, and homology relationships for genes in over 6000 species. This makes PhylomeDB the largest and most comprehensive public repository of gene phylogenies |
| Organism(s) covered: | |
| Tag - Target: | Genome/Gene |
| Tag - Information type: | Classification, Sequence |
| Reference(s) - PubMed ID/DOI: | PubMed ID: DOI: PubMed ID: DOI: PubMed ID: DOI: |
| Language(s): | English |
| Operational status: | Active |
| Link(s) to Downloadable data: | - |
| Link(s) to Metadata of downloadable data: | - |
| Link(s) to Terms of use: | - |
| Link(s) to "How to use": | - |
| Contact information of database: | - |
| Link(s) to API / SPARQL endpoint | - |
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Link to LSDB Archive:
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Link to MEDALS Database list:
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Link to TogoTV:
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Link to FAIRsharing:
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https://fairsharing.org/10.25504/FAIRsharing.7hxxc4 |
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Similar databases:
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Genome Project of Symbiobacterium thermophilum RARTF ECRbase PGF-DB Evola COGs PlantsT Hoppsigen ASAP II TreeFam |
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Record maintainer
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See the corresponding part in the FAIRsharing record. |
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Record source:
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 (2018-12-21)
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Date of creation of this record:
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2019-03-28 |
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Last update date of this record:
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2024-07-24 |
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Record license:
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Creative Commons Attribution and Share-alike (CC-BY-SA) International 4.0 license |