SALAD Database: Surveyed conserved motif ALignment diagram and the Associating Dendrogram
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| Database maintenance site: | NARO (National Agriculture and Food Research Organization) (Link to J-Global) |
| Country/Region: | Japan |
| Database description: | The SALAD database supports the construction of dendrograms from amino acid sequence similarities in plants, clustering them into proteins with similar functions. This database has following functions; 1) Conserved domains (motifs) can be displayed graphically, 2) annotations between plant species can be compared easily 3) similar annotations can be clustered 4) molecular evolutionary trees can be constructed easily per conserved motif. The database uses non-redundant complete genomic information for the analysis, and an amino acid displacement matrix for clustering. The most current version supports comparisons of up to 10 plant species. |
| Organism(s) covered: | |
| Tag - Target: | Protein |
| Tag - Information type: | Sequence, Classification |
| Reference(s) - PubMed ID/DOI: | PubMed ID: DOI: |
| Language(s): | Japanese, English |
| Operational status: | Active |
| Link(s) to Downloadable data: | - |
| Link(s) to Metadata of downloadable data: | - |
| Link(s) to Terms of use: | - |
| Link(s) to "How to use": | - |
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| Link(s) to API / SPARQL endpoint | - |
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Link to LSDB Archive:
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Link to MEDALS Database list:
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Link to TogoTV:
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Link to FAIRsharing:
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Similar databases:
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PlantsT KEGG SSDB Database Blocks CyanoClust database HAMAP database of microbial protein families PANDIT MnM COGs Pfam InterPro |
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Record maintainer
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Integbio Database Catalog |
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Record source:
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Date of creation of this record:
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2013-06-17 |
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Last update date of this record:
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2014-06-20 |
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Record license:
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Creative Commons CC0 license |