KEGG SSDB Database: Sequence Similarity Database (Orthologs/paralogs, conserved gene clusters, and sequence motifs)
Kyoto University Institute for Chemical Research Bioinformatics Center (Link to J-Global) | |
Japan | |
The KEGG SSDB (Sequence Similarity DataBase) organizes amino acid sequence similarities among all protein-coding genes in complete genomes computationally generated from the geneS database in KEGG. Using the SSEARCH program, all possible pairwise genomes are compared and gene pairs with a Smith-Waterman similarity score of 100 or more are entered into SSDB together with the information on best hits and bidirectional best hits (best-best hits). SSDB is a weighted and directed graph that can be used to search orthologs and paralogs, and conserved gene clusters, taking positional correlations on the chromosome into consideration. | |
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Protein | |
Sequence, Classification | |
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SALAD Database PDB-REPRDB CluSTr InterPro MnM Pfam PROSITE Blocks PlantsT CyanoClust database |
Integbio Database Catalog | |
2013-06-17 | |
2018-12-16 | |
Creative Commons CC0 license |