Closed
Hoppsigen: Homologous Processed Pseudogenes database
 ID: | |
| Database name: | |
| Alternative name: | |
| URL: | |
| Database maintenance site: | Pole Bioinformatique Lyonnais |
| Country/Region: | France |
| Database description: | Hoppsigen is a nucleic database. It provides information on homologous retroelements (like SINE and LINE). There are 5,823 human retroelements and 3,934 mouse retroelements that have been identified and are contained in the repository. The non-functional sequences were given the name pseudogenes. The database, however, also contains functional genes obtained from ENSEMBL. A multiple alignment was calculated between the functional genes and their homologous retroelements. This was done for each family. A phylogenetic tree was also determined for each alignment and is available in the database. A www-query search option is provided. |
| Organism(s) covered: | , |
| Tag - Target: | Genome/Gene |
| Tag - Information type: | Sequence, Classification |
| Reference(s) - PubMed ID/DOI: | PubMed ID: DOI: |
| Language(s): | English |
| Operational status: | Closed |
| Link(s) to Downloadable data: | - |
| Link(s) to Metadata of downloadable data: | - |
| Link(s) to Terms of use: | - |
| Link(s) to "How to use": | - |
| Contact information of database: | - |
| Link(s) to API / SPARQL endpoint | - |
|
Link to LSDB Archive:
|
- |
|
Link to MEDALS Database list:
|
- |
|
Link to TogoTV:
|
- |
|
Link to FAIRsharing:
|
- |
|
Similar databases:
|
Pseudogene.org Genome Project of Symbiobacterium thermophilum RARTF ECRbase Evola ASAP II PGF-DB PhylomeDB COGs GenProtEC (E. Coli genome and proteome database) |
|
Record maintainer
|
Integbio Database Catalog |
|
Record source:
|
|
|
Date of creation of this record:
|
2013-06-17 |
|
Last update date of this record:
|
2022-06-26 |
|
Record license:
|
Creative Commons CC0 license |
