KEGG SSDB Database: Sequence Similarity Database (Orthologs/paralogs, conserved gene clusters, and sequence motifs)
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| Database maintenance site: | Kyoto University Institute for Chemical Research Bioinformatics Center (Link to J-Global) |
| Country/Region: | Japan |
| Database description: | The KEGG SSDB (Sequence Similarity DataBase) organizes amino acid sequence similarities among all protein-coding genes in complete genomes computationally generated from the geneS database in KEGG. Using the SSEARCH program, all possible pairwise genomes are compared and gene pairs with a Smith-Waterman similarity score of 100 or more are entered into SSDB together with the information on best hits and bidirectional best hits (best-best hits). SSDB is a weighted and directed graph that can be used to search orthologs and paralogs, and conserved gene clusters, taking positional correlations on the chromosome into consideration. |
| Organism(s) covered: | - |
| Tag - Target: | Protein |
| Tag - Information type: | Sequence, Classification |
| Reference(s) - PubMed ID/DOI: | - |
| Language(s): | English |
| Operational status: | Active |
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| Link(s) to API / SPARQL endpoint | - |
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Link to LSDB Archive:
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Link to MEDALS Database list:
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Link to TogoTV:
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Link to FAIRsharing:
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Similar databases:
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SALAD Database PDB-REPRDB CluSTr InterPro MnM Pfam PROSITE Blocks PlantsT CyanoClust database |
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Record maintainer
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Integbio Database Catalog |
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Record source:
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Date of creation of this record:
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2013-06-17 |
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Last update date of this record:
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2018-12-16 |
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Record license:
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Creative Commons CC0 license |
