Bgee DataBase for Gene Expression Evolution: Bgee
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| Database maintenance site: | BGEE administrators |
| Country/Region: | Switzerland |
| Database description: | Bgee is a database for retrieval and comparison of gene expression patterns across multiple animal species. It provides an intuitive answer to the question "where is a gene expressed?" and supports research in cancer and agriculture as well as evolutionary biology. Bgee data are produced from multiple data types (bulk and single-cell RNA-Seq, Affymetrix, in situ hybridization, EST data), and multiple data sets, that are all integrated consistently to provide a single answer to the question: "where is this gene expressed?" Bgee is based exclusively on curated "normal", healthy wild-type expression data (e.g., no gene knock-out, no treatment, no disease), to provide a comparable reference of normal gene expression. Bgee produces calls of presence/absence of expression, and of differential over-/under-expression, integrated along with information of gene orthology, and of homology between organs. This allows comparisons of expression patterns between species. |
| Organism(s) covered: | , , , , , , , , , , , , , , , , , , , , , , , , , , , |
| Tag - Target: | Genome/Gene, Organism |
| Tag - Information type: | Expression, Localization, Classification |
| Reference(s) - PubMed ID/DOI: | PubMed ID: DOI: PubMed ID: DOI: PubMed ID: DOI: |
| Language(s): | English |
| Operational status: | Active |
| Link(s) to Downloadable data: | - |
| Link(s) to Metadata of downloadable data: | - |
| Link(s) to Terms of use: | - |
| Link(s) to "How to use": | - |
| Contact information of database: | - |
| Link(s) to API / SPARQL endpoint | https://www.bgee.org/sparql/ |
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Link to LSDB Archive:
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Link to MEDALS Database list:
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Link to TogoTV:
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Link to FAIRsharing:
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https://fairsharing.org/10.25504/FAIRsharing.x6d6sx |
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Similar databases:
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e-Mouse Atlas of Gene Expression SAGD Haemosphere Melonet DB TodoFirGene DropViz MOROKOSHI Sorghum transcriptome database PmiREN MitoGenesisDB Silkworm, Bombyx mori, reference transcriptome data |
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Record maintainer
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See the corresponding part in the FAIRsharing record. |
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Record source:
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 (2018-12-21)
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Date of creation of this record:
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2019-03-28 |
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Last update date of this record:
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2024-07-22 |
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Record license:
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Creative Commons Attribution and Share-alike (CC-BY-SA) International 4.0 license |