Closed
iJGVD: Integrative Japanese Genome Variation Database
 ID: | |
| Database name: | |
| Alternative name: | |
| URL: | |
| Database maintenance site: | Tohoku Medical Megabank Organization,Tohoku University (Link to J-Global) |
| Country/Region: | Japan |
| Database description: | iJGVD is a database about genome variation in the Japanese population. This database provides data of genomic variations obtained by whole-genome sequencing of Japanese individuals participating in the genome cohort study by ToMMo (Tohoku University Tohoku Medical Megabank Organization). It contains data on single nucleotide variations (SNVs) and their frequencies among the 1070 Japanese individuals from the cohort. SNVs and their information, such as allele frequency, can be retrieved with a genome browser that provides an intuitive view of SNV information, along with the reference human genome sequence using hg19/GRCh37 coordinate system. |
| Organism(s) covered: | |
| Tag - Target: | Genome/Gene, Genetic variation, Health/Disease |
| Tag - Information type: | Sequence |
| Reference(s) - PubMed ID/DOI: | PubMed ID: DOI: |
| Language(s): | English |
| Operational status: | Closed |
| Link(s) to Downloadable data: | https://jmorp.megabank.tohoku.ac.jp/201909/downloads |
| Link(s) to Metadata of downloadable data: | - |
| Link(s) to Terms of use: | https://jmorp.megabank.tohoku.ac.jp/201909/help/conditions-of-use |
| Link(s) to "How to use": | - |
| Contact information of database: | - |
| Link(s) to API / SPARQL endpoint | - |
|
Link to LSDB Archive:
|
- |
|
Link to MEDALS Database list:
|
- |
|
Link to TogoTV:
|
- |
|
Link to FAIRsharing:
|
- |
|
Similar databases:
|
TogoVar JSNP (Archive) gnomAD Cancer Genome Mine VDJbase DistiLD Database: Diseases and Traits in Linkage Disequilibrium Blocks DBASS Integrated Cancer Genome Database iDog Mutation Database |
|
Record maintainer
|
Integbio Database Catalog |
|
Record source:
|
|
|
Date of creation of this record:
|
2015-10-27 |
|
Last update date of this record:
|
2021-05-09 |
|
Record license:
|
Creative Commons CC0 license |