TogoVar: Integrated database of Japanese genomic variation
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| Database maintenance site: | NBDC (Japan Science and Technology Agency Department of NBDC Program) (Link to J-Global), DBCLS (Database Center for Life Science, Research Organization of Information and Systems) |
| Country/Region: | Japan |
| Database description: | TogoVar (NBDC's integrated database of Japanese genomic variation) is a database that has collected and organized genome sequence differences between individuals (variants) in the Japanese population and disease information associated with them. TogoVar provides variant frequencies in the Japanese population that have been aggregated across research projects. Two available datasets, JGA-NGS and JGA-SNP, are obtained by aggregating individual genomic data that have been registered in the NBDC Human Database / Japanese Genotype-phenotype Archive (JGA). In addition, TogoVar integrates information related to genotypes or phenotypes that has been compiled independently in a variety of different databases and provides information for interpreting variants in a one-stop, easy-to-understand manner. Users can learn how to use it by a movie: https://togotv.dbcls.jp/en/20181012.html |
| Organism(s) covered: | |
| Tag - Target: | Genome/Gene, Genetic variation, Health/Disease |
| Tag - Information type: | Sequence |
| Reference(s) - PubMed ID/DOI: | PubMed ID: DOI: |
| Language(s): | English |
| Operational status: | Active |
| Link(s) to Downloadable data: | https://togovar.org/doc/downloads |
| Link(s) to Metadata of downloadable data: | https://grch38.togovar.org/downloads/release/current/grch38/frequency/tsv/README.txt, https://grch37.togovar.org/downloads/release/current/grch37/frequency/tsv/README.txt |
| Link(s) to Terms of use: | https://togovar.org/doc/terms |
| Link(s) to "How to use": | - |
| Contact information of database: | https://togovar.org/doc/ja/contact |
| Link(s) to API / SPARQL endpoint | - |
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Link to LSDB Archive:
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Link to MEDALS Database list:
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Link to TogoTV:
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https://togotv.dbcls.jp/en/result.html?type=manual&lang=en&page=1&query=TogoVar |
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Link to FAIRsharing:
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https://fairsharing.org/biodbcore-001182/ |
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Similar databases:
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iJGVD gnomAD DBASS DisGeNET DistiLD Database: Diseases and Traits in Linkage Disequilibrium Blocks VDJbase JSNP (Archive) Integrated Cancer Genome Database BRCA Share Cancer Genome Mine |
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Record maintainer
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Integbio Database Catalog |
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Record source:
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Date of creation of this record:
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2018-10-23 |
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Last update date of this record:
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2023-10-01 |
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Record license:
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Creative Commons CC0 license |