ATTED-II: Arabidopsis thaliana trans-factor and cis-element prediction database
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| Database maintenance site: | Tohoku University (Link to J-Global), The University of Tokyo The Institute of Medical Science Human Genome Center (Link to J-Global) |
| Country/Region: | Japan |
| Database description: | ATTED-II is a coexpression database for Arabidopsis and other plant species. It stores calculated coexpression data based on microarray data and RNAseq data from AtGenExpress (TAIR), ArrayExpress and DDBJ. Mutual rank (MR) index is used as a coexpression measure, shows a higher predictive power for gene function than the Pearson’s correlation coefficient (PCC). ATTED-II provides a list of coexpressed genes and their orthologous for a query gene. NetworkDrawer tool provides drawing of gene networks in multiple query genes. The coexpression data are downloadable from Bulk download page. |
| Organism(s) covered: | , , , , , , , , |
| Tag - Target: | Genome/Gene, cDNA/EST |
| Tag - Information type: | Expression, Interaction/Pathway |
| Reference(s) - PubMed ID/DOI: | PubMed ID: DOI: PubMed ID: DOI: PubMed ID: DOI: PubMed ID: DOI: PubMed ID: DOI: PubMed ID: DOI: |
| Language(s): | English |
| Operational status: | Active |
| Link(s) to Downloadable data: | http://atted.jp/top_download.shtml |
| Link(s) to Metadata of downloadable data: | http://atted.jp/download.shtml |
| Link(s) to Terms of use: | http://atted.jp/license.shtml |
| Link(s) to "How to use": | - |
| Contact information of database: | - |
| Link(s) to API / SPARQL endpoint | - |
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Link to LSDB Archive:
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- |
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Link to MEDALS Database list:
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http://medals.jp/elist/detail/126.html |
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Link to TogoTV:
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Link to FAIRsharing:
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https://fairsharing.org/biodbcore-000211 |
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Similar databases:
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ALCOdb COXPRESdb Rubber Genome & Transcriptome Database PODC RefExA RIKEN Hub Database Project ARTADE CREATE portal (Archive) HPV Sequence Database Cucurbit Genomics Database |
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Record maintainer
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Integbio Database Catalog |
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Record source:
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Date of creation of this record:
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2013-06-17 |
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Last update date of this record:
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2019-02-04 |
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Record license:
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Creative Commons CC0 license |