ATTED-II: Arabidopsis thaliana trans-factor and cis-element prediction database
Tohoku University (Link to J-Global), The University of Tokyo The Institute of Medical Science Human Genome Center (Link to J-Global) | |
Japan | |
ATTED-II is a coexpression database for Arabidopsis and other plant species. It stores calculated coexpression data based on microarray data and RNAseq data from AtGenExpress (TAIR), ArrayExpress and DDBJ. Mutual rank (MR) index is used as a coexpression measure, shows a higher predictive power for gene function than the Pearson’s correlation coefficient (PCC). ATTED-II provides a list of coexpressed genes and their orthologous for a query gene. NetworkDrawer tool provides drawing of gene networks in multiple query genes. The coexpression data are downloadable from Bulk download page. | |
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Genome/Gene, cDNA/EST | |
Expression, Interaction/Pathway | |
PubMed ID: DOI: PubMed ID: DOI: PubMed ID: DOI: PubMed ID: DOI: PubMed ID: DOI: PubMed ID: DOI: | |
English | |
Active | |
http://atted.jp/top_download.shtml | |
http://atted.jp/download.shtml | |
http://atted.jp/license.shtml | |
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Integbio Database Catalog | |
2013-06-17 | |
2019-02-04 | |
Creative Commons CC0 license |