ID: | NBDC02347 |
Database name: | Rubber Genome & Transcriptome Database |
Alternative name: | - |
URL: | http://matsui-lab.riken.jp/rubber/home.html |
Database maintenance site: | RIKEN (The Institute of Physical and Chemical Research) (Link to J-Global) |
Country/Region: | Japan |
Database description: | Rubber Genome & Transcriptome Database provides rubber tree genome sequence and multi-transcriptomics data. This database provides genome information including gene functional annotations and multi-transcriptome data of RNA-seq, full-length cDNAs including PacBio Isoform sequencing (Iso-Seq), ESTs and genome wide transcription start sites (TSSs) derived from CAGE technology. It also provides information about co-expressed genes for identifying functionally related gene sets and/or genes regulated by the same transcription factor (TF). Users are able to access multi-transcriptome data through both a gene-oriented web page and a genome browser. This database allows to keyword search, sequence homology search and gene expression search; users can also select their expression threshold easily. |
Organism(s) covered: | Hevea brasiliensis (3981) |
Tag - Target: | Genome/Gene, cDNA/EST |
Tag - Information type: | Sequence, Expression, Interaction/Pathway |
Reference(s) - PubMed ID/DOI: | - |
Language(s): | English |
Operational status: | Active |
Link(s) to Downloadable data: | http://matsui-lab.riken.jp/rubber/download.html |
Link(s) to Metadata of downloadable data: | - |
Link(s) to Terms of use: | - |
Link(s) to "How to use": | - |
Contact information of database: | - |
Link(s) to API / SPARQL endpoint | - |