MBGD: Microbial Genome Database for Comparative Analysis
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| Database maintenance site: | National Institute for Basic Biology (Link to J-Global) |
| Country/Region: | Japan |
| Database description: | MBGD is a database with a workbench system for comparative analysis of completely sequenced microbial genomes, mainly for creating orthologous or homologous gene cluster tables. MBGD classifies genomes by the hierarchical clustering method known as UPGMA, using precomputed similarity relationships identified by all-against-all BLAST search. Users can change the set of organisms or cutoff parameters to create their own orthologous groupings. Thus comparative genomics is facilitated from various points of view such as ortholog identification, paralog clustering, motif analysis and gene order comparison. |
| Organism(s) covered: | , , , , , , , , , |
| Tag - Target: | Genome/Gene, Organism |
| Tag - Information type: | Sequence, Taxonomy |
| Reference(s) - PubMed ID/DOI: | PubMed ID: DOI: PubMed ID: DOI: PubMed ID: DOI: PubMed ID: DOI: |
| Language(s): | English |
| Operational status: | Active |
| Link(s) to Downloadable data: | http://mbgd.genome.ad.jp/htbin/view_arch.cgi |
| Link(s) to Metadata of downloadable data: | http://mbgd.genome.ad.jp/htbin/view_arch.cgi |
| Link(s) to Terms of use: | - |
| Link(s) to "How to use": | - |
| Contact information of database: | - |
| Link(s) to API / SPARQL endpoint | - |
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Link to LSDB Archive:
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Link to MEDALS Database list:
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Link to TogoTV:
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https://togotv.dbcls.jp/en/result.html?type=lecture&lang=en&page=1&query=MBGD |
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Link to FAIRsharing:
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Similar databases:
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ECGB RECOG Silver Project: Ape Genome Sequencing UNITE Evolutionary Genealogy of Genes: Non-supervised Orthologous Groups GenomeSync Description of Plant Viruses OHNOLOGS TreeBase J-amir |
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Record maintainer
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Integbio Database Catalog |
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Record source:
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Date of creation of this record:
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2013-06-17 |
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Last update date of this record:
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2023-09-28 |
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Record license:
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Creative Commons CC0 license |
