AAindex: Amino acid indices, substitution matrices and pair-wise contact potentials
 ID: | |
| Database name: | |
| Alternative name: | |
| URL: | |
| Database maintenance site: | Kyoto University Institute for Chemical Research Bioinformatics Center (Link to J-Global) |
| Country/Region: | Japan |
| Database description: | The AAindex database collects and organizes amino acid properties. Users can search from dozens of studies summarizing multiple biophysical parameters for three types of information: - AAindex1: Biophysical properties of individual amino acids. All indexed studies have been compared to other studies in the database and pairwise correlation coefficients between related studies are provided. - AAindex2: Substitution indices indicating amino acid similarity. - AAindex3: Pairwise contact potentials between amino acids in various contexts. All three databases can be searched either by study or keyword using DBGET. |
| Organism(s) covered: | - |
| Tag - Target: | Protein |
| Tag - Information type: | Sequence |
| Reference(s) - PubMed ID/DOI: | PubMed ID: DOI: PubMed ID: DOI: PubMed ID: DOI: PubMed ID: DOI: PubMed ID: DOI: |
| Language(s): | English |
| Operational status: | Active |
| Link(s) to Downloadable data: | ftp://ftp.genome.jp/pub/db/community/aaindex/ |
| Link(s) to Metadata of downloadable data: | http://www.genome.jp/aaindex/aaindex_help.html, ftp://ftp.genome.jp/pub/db/community/aaindex/aaindex.doc |
| Link(s) to Terms of use: | - |
| Link(s) to "How to use": | - |
| Contact information of database: | - |
| Link(s) to API / SPARQL endpoint | - |
|
Link to LSDB Archive:
|
- |
|
Link to MEDALS Database list:
|
- |
|
Link to TogoTV:
|
- |
|
Link to FAIRsharing:
|
- |
|
Similar databases:
|
TMFunction (Archive) PMD IPI Termini-Oriented Protein Function INferred Database CASA db H-EPD InBase OWL PepBase PeptideAtlas |
|
Record maintainer
|
Integbio Database Catalog |
|
Record source:
|
|
|
Date of creation of this record:
|
2013-06-17 |
|
Last update date of this record:
|
2013-06-17 |
|
Record license:
|
Creative Commons CC0 license |
