Database maintenance site: Bioinformatics Center, Kyoto University
Organism(s) covered:
Description: CaMPDB is a database of calpain, a calcium-dependent protease as well as one of the most typical enzymes of modulatory proteolysis. This database consists of three parts: calpai...Show Details...
Description: The DB-AT is a database composed of full-length cDNA datasets and RNA-seq datasets of several Parasites; malaria, Anopheles, Toxoplasma, Tsetse, Cryptosporidium, Babesia, Neospo...Show Details...
Database maintenance site: The University of Tokyo
Organism(s) covered:Drosophila melanogaster
Description: FLYBRAIN Neuron Database is a integrated database about a central brain of Drosophila melanogaster. It's constructed with three databases and a tool; 1) Neuron Data provides pro...Show Details...
Description: Flybrain is an anatomical database of the central and peripheral nervous system of Drosophila melanogaster. It contains basic structure of the nervous system and more specific i...Show Details...
Database maintenance site: Meiji pharmaceutical university
Organism(s) covered:Homo sapiens
Description: This is a database of structural changes on alpha-galactosidase A (GLA) responsible for Fabry disease. It contains clinical phenotypes, genotypes, and structures of mutant GLAs....Show Details...
Database maintenance site: University of Fukui, Faculty of Medical Sciences
Organism(s) covered:Homo sapiens | Rattus
Description: ED-genes is a database for endocrine disrupter-sensitive genes in reproductive system. It contains information about sensitive genes to endocrine disrupters expressed in mammali...Show Details...
Database maintenance site: The Dynamic Brain Platform committee
Organism(s) covered:
Description: Dynamic Brain Platform is an integrated site which provides scientists, academics and other practitioners with current information about neural dynamics in the brain. This site ...Show Details...
Database maintenance site: Tokyo Institute of Technology School of Life Science and Technology
Organism(s) covered:
Description: DTA DATABASE collects results of DTA (Dihedral Transition Analysis) from comprehensive and non-redundant dataset of high-resolution protein structures. DTA is the method for cha...Show Details...
Description: DBSCR is a database for transcriptional regulation events in Streptomyces coelicolor A3(2) and its closest relatives, such as S. griseus, S. peucetius, S. albogriseolus, S. vine...Show Details...
Description: This site is a database about synaptic connectivity of C. elegans. It contains figures and tables about the synaptic connectivity among neurons in the pharynx and the somatic ne...Show Details...
Database maintenance site: RIKEN (The Institute of Physical and Chemical Research)
Organism(s) covered:
Description: Cerebellar Platform is an integrated database for cerebellar research. This database contains mini-reviews of contemporary cerebellar research, list of papers and mathematical m...Show Details...
Database maintenance site: CEOP Tsukuba Reference Site Project
Organism(s) covered:
Description: CTRS is a portal site for the archiving hydrometeorological data observed by the multiple institutes and university in Tsukuba Science City, Japan. It contains observed data suc...Show Details...
Database maintenance site: RIKEN CSRS (RIKEN Center for Sustainable Resource Science)
Organism(s) covered:Manihot esculenta | Ricinus communis | Populus trichocarpa | Vitis vinifera | Arabidopsis thaliana
Description: The Cassava Online Archive is a database about cassava mRNA sequences and ESTs currently available from NCBI (Genbank/EMBL/DDBJ) and their annotations. This database contains an...Show Details...
Description: CancerProView is an image database for cancer-associated protein (domains) and their interaction pathways. It contains information of transcripts and protein sequences about can...Show Details...
Description: ANISEED is a database about gene expression in Ascidian embryos. It contains detailed anatomical ontologies for Ascidian embryos, and quantitative geometrical descriptions of de...Show Details...
Database maintenance site: Kyushu University Faculty of Agriculture
Organism(s) covered:Hexapoda
Description: AIIC is a portal site of databases about types and normal specimens collected in Asia and the Pacific Area. It is composed of insect databases, mainly based on the Kyushu Univer...Show Details...
Database maintenance site: Center for iPS Cell Research and Application, Kyoto University
Organism(s) covered:Homo sapiens
Description: SHOGoin is a database about differentiated and stem cells in humans. Each entry contains information about morphologic features, related articles, OBO cell type ontology, cell n...Show Details...
Database maintenance site: Kyoto University Institute for Chemical Research Bioinformatics Center
Organism(s) covered:
Description: KEGG MODULE is a database of manually defined functional units called KEGG modules identified by M numbers, used for annotation and biological interpretation of sequenced genome...Show Details...
Database maintenance site: Division of Systems Medical Science, Institute for Comprehensive Medical Science, Fujita Health University
Organism(s) covered:Mus musculus
Description: The Mouse Phenotype Database is for raw data of behavioral tests from mouse strains. Data were collected from published articles. It comprises three parts; Mouse Phenotype Datab...Show Details...
Database maintenance site: The University of Tokyo
Organism(s) covered:Oryzias latipes
Description: The Medaka Methylome Browser database gathers kowledge about methylomes of medaka genomes with Illumina sequencing at single-base resolution using genomic DNA from three librari...Show Details...
Database maintenance site: The University of Tokyo
Organism(s) covered:Caenorhabditis elegans
Description: WormTSS is a comprehensive collection of transcription start sites (TSSs) for trans-spliced genes in C. elegans. It consists of a genome browser and a TSS list. The list contain...Show Details...
Database maintenance site: DBCLS (Database Center for Life Science, Research Organization of Information and Systems)
Organism(s) covered:
Description: GGGenome is an ultrafast search engine for nucleotide sequences. It allows searches for sequences containing mismatches, gaps or inserts. GGGenome shows the first 50 results for...Show Details...
Database maintenance site: NLM (National Library of Medicine)
Organism(s) covered:Homo sapiens
Description: ClinicalTrials.gov is a results database of publicly and privately supported clinical studies of human participants conducted around the world. It provides a registry to submit ...Show Details...
Description: Orphanet is a portal site for rare diseases and orphan drugs. It provides inventory of rare diseases and classification, inventory of orphan drugs, clinical trials, etc.Show Details...
Database maintenance site: Japan Hand Search & Electronic Search Society
Organism(s) covered:Homo sapiens
Description: This database provides evidence reports by publications about Kampo Treatment, Japanese Acupuncture and Moxibustion, Anma-Massage-Shiatsu, and Korean Medicine Treatment.Show Details...
Description: Percellome Database is a toxic genomics database that provides experimental data on gene expression and toxicity in mouse, rat, and human cells following exposure to more than 1...Show Details...
Description: This database provides gene information and literature information about GatVirus. Users can specify an option such as gene sequence and kind of virus.Show Details...
Database maintenance site: Tokyo Women's Medical University, Maternal and Perinatal Center
Organism(s) covered:Homo sapiens
Description: This site is a database for the morbidity and the mortality of VLBW infants in Japan. It provides data about infants who were born in the participating hospitals with birth weig...Show Details...
Description: The DDIDA database provides mechanism-based information about drugs, micromolecules and body phenotypic response (disease/symptom) relationships. The data are derived from Daily...Show Details...
Database maintenance site: NARO (National Agriculture and Food Research Organization)
Organism(s) covered:Oryza sativa
Description: FiT-DB is a database for gene expression and statistical modeling of transcriptomic dynamics in field conditions. It contains 461 microarray data of Oryza sativa and the best-fi...Show Details...
Database maintenance site: NARO (National Agriculture and Food Research Organization)
Organism(s) covered:Hordeum vulgare
Description: Bex-db is a database of a malting barley (Haruna Nijo, two-rowed) transcriptome data. It includes sequences of barley full-length DNAs and expression profiles resulting from mic...Show Details...
Closed
AfRicA DB: African Rice Annotation DataBase
Database maintenance site: NARO (National Agriculture and Food Research Organization)
Organism(s) covered:Oryza glaberrima
Description: AfRicA DB is a database for genome annotation of O. glaberrima. It provides various kinds of information such as genome annotations, insertion/deletion, single nucleotide polymo...Show Details...
Closed
PGF-DB: Plant Gene Family Database
Database maintenance site: NARO (National Agriculture and Food Research Organization)
Description: PGF-DB is a database for analysis of gene families from Oryza sativa, Sorghum bicolor, Zea mays, and Arabidopsis thaliana. It contains more than ten thousands gene families cons...Show Details...
Database maintenance site: NARO (National Agriculture and Food Research Organization)
Organism(s) covered:Triticum aestivum
Description: Komugi GSP is a genome analysis program for wheat in Japan. This database includes the data of genome sequences, transcriptomes, and gene annotations. Some data are downloadable...Show Details...
Database maintenance site: NARO (National Agriculture and Food Research Organization)
Organism(s) covered:Viridiplantae
Description: This database is an annotation pipeline for flowering plant genomes. If users submit a DNA sequence, fpgp predicts exon-intron structures on the basis of full-length cDNA (FLcDN...Show Details...
Database maintenance site: NARO (National Agriculture and Food Research Organization)
Organism(s) covered:Glycine max
Description: DAIZUbase is an integrated soybean genome database and data mining tools; 2 map browsers (GBrowse, UnifiedMap), a gene viewer, and BLAST search system. This database provides th...Show Details...
Database maintenance site: Kazusa DNA Research Institute
Organism(s) covered:Raphanus sativus
Description: Raphanus sativus Genome DataBase is a database of DNA markers of Raphanus sativus. It contains information on sequences including markers of EST-SSR, isozyme, R-EST, RAPD, RFLP,...Show Details...
Database maintenance site: Kazusa DNA Research Institute
Organism(s) covered:Dianthus caryophyllus
Description: This is a database for the Dianthus caryophyllus (carnation) genome information. The sequence data for each gene, annotations such as GO, and results of BLASTP analysis against ...Show Details...
Description: KNApSAcK Bicycle is a database on proteins and metabolism reaction of algae. It contains information about proteins that existed in algae, and reaction mechanism or pathway in w...Show Details...
Database maintenance site: University of Toyama Institute of Natural Medicine
Organism(s) covered:
Description: TradMPD is a database of traditional medical and pharmaceutical drugs. It collects information on crude drugs, Kampo formulas, and related experimental materials such as, crude ...Show Details...
Description: HGVD is a database providing a central resource to archive and display Japanese genetic variation and association between the variation and transcription level of genes. It cont...Show Details...
Database maintenance site: NITE (National Institute of Technology and Evaluation)
Organism(s) covered:Bacteria | Archaea
Description: MiFuP is a database of functional potentials deduced from microbial genomes. Users can easily search for microbes with potential functions of interest or for functional potentia...Show Details...
Database maintenance site: RIKEN (The Institute of Physical and Chemical Research)
Organism(s) covered:Homo sapiens | Mus musculus
Description: FANTOM5 is a database about comprehensive expression profiles and functional annotation of mammalian cell-type-specific transcriptomes. It contains experimental data of the FANT...Show Details...
Database maintenance site: NARO (National Agriculture and Food Research Organization)
Organism(s) covered:
Description: AgrID is a portal site for genome information for crops and livestock. AgrID links to websites of genome sequences, genome annotation, gene expression, mutant resources, etc., a...Show Details...
Database maintenance site: National Institutes of Biomedical Innovation, Health and Nutrition
Organism(s) covered:Embryophyta
Description: "Comprehensive Medicinal Plant Database" is an encyclopaedia of medicinal plants and provides a user-friendly interface for searching and viewing information about medicinal pla...Show Details...
Database maintenance site: NARO (National Agriculture and Food Research Organization)
Organism(s) covered:Nephotettix cincticeps
Description: This database provides ESTs of the green rice leafhopper (NC, Nephotettix cincticeps), called "TSUMAGURO-YOKOBAI" in Japanese. Each entry contains sequences, gene ontology, and ...Show Details...
Database maintenance site: NARO (National Agriculture and Food Research Organization)
Organism(s) covered:Polypedilum vanderplanki
Description: This database provides ESTs about the Sleeping Chironomid, Polypedilum vanderplanki (Diptera, Chironomidae). The cDNAs are derived from various cDNA libraries constructed from l...Show Details...
Database maintenance site: NARO (National Agriculture and Food Research Organization)
Organism(s) covered:Plautia stali
Description: PcsEST is a database about ESTs of an oriental stink bug (PS, Plautia crossota stali), called "CYABANE-AO-KAMEMUSHI" in Japanese. Each entry contains sequences, gene ontology, a...Show Details...
Database maintenance site: NITE (National Institute of Technology and Evaluation)
Organism(s) covered:
Description: J-CHECK is a database developed to provide the information regarding "Act on the Evaluation of Chemical Substances and Regulation of Their Manufacture, etc. "(CSCL) by the autho...Show Details...
