FANTOM5: Functional Annotation of the Mammalian Genome
 ID: | |
| Database name: | |
| Alternative name: | |
| URL: | |
| Database maintenance site: | RIKEN (The Institute of Physical and Chemical Research) (Link to J-Global) |
| Country/Region: | Japan |
| Database description: | FANTOM5 is a database about comprehensive expression profiles and functional annotation of mammalian cell-type-specific transcriptomes. It contains experimental data of the FANTOM consortium, an international collaborative research project initiated and organized by the RIKEN. This database contains mapped data using Cap Analysis of gene Expression (CAGE), which are the sets of transcripts, transcription factors, promoters and enhancers active in the majority of mammalian primary cell types. These data is furthermore complemented with profiles from cancer cell lines, and tissues. |
| Organism(s) covered: | , |
| Tag - Target: | DNA, RNA |
| Tag - Information type: | Sequence, Expression |
| Reference(s) - PubMed ID/DOI: | PubMed ID: DOI: PubMed ID: DOI: |
| Language(s): | Japanese, English |
| Operational status: | Active |
| Link(s) to Downloadable data: | https://fantom.gsc.riken.jp/5/ |
| Link(s) to Metadata of downloadable data: | - |
| Link(s) to Terms of use: | https://fantom.gsc.riken.jp/5/ |
| Link(s) to "How to use": | - |
| Contact information of database: | - |
| Link(s) to API / SPARQL endpoint | - |
|
Link to LSDB Archive:
|
https://dbarchive.biosciencedbc.jp/en/fantom5/desc.html |
|
Link to MEDALS Database list:
|
- |
|
Link to TogoTV:
|
- |
|
Link to FAIRsharing:
|
- |
|
Similar databases:
|
FANTOM4 FANTOM6 DiProDB The UCSC Archaeal Genome Browser The Diatom EST Database Noncoding RNA database Yeast Searching for Transcriptional Regulators and Consensus Tracking Transmembrane Helices in Genome Sequences Plant snoRNA Database |
|
Record maintainer
|
Integbio Database Catalog |
|
Record source:
|
|
|
Date of creation of this record:
|
2014-05-07 |
|
Last update date of this record:
|
2022-01-20 |
|
Record license:
|
Creative Commons CC0 license |