Cassava Online Archive
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| Alternative name: | - |
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| Database maintenance site: | RIKEN CSRS (RIKEN Center for Sustainable Resource Science) |
| Country/Region: | Japan |
| Database description: | The Cassava Online Archive is a database about cassava mRNA sequences and ESTs currently available from NCBI (Genbank/EMBL/DDBJ) and their annotations. This database contains annotations based on the similarity search results collated from several protein databases and the similarity map results from the cassava (Manihot esculenta, Euphorbiaceae), castor bean (Ricinus communis, Euphorbiaceae), poplar (Populus trichocarpa, Salicaceae), grape (Vitis vinifera, Vitaceae), and Arabidopsis thaliana (Brassicaceae) genome sequences. It also contains domain organization as predicted by InterProScan and gene Ontology (GO) terms for improving the annotations. This database allows to search with gene function, accession number, and sequence similarity (BLAST). |
| Organism(s) covered: | , , , , |
| Tag - Target: | Genome/Gene, cDNA/EST, Genetic variation |
| Tag - Information type: | Sequence |
| Reference(s) - PubMed ID/DOI: | PubMed ID: DOI: |
| Language(s): | English |
| Operational status: | Active |
| Link(s) to Downloadable data: | - |
| Link(s) to Metadata of downloadable data: | - |
| Link(s) to Terms of use: | - |
| Link(s) to "How to use": | - |
| Contact information of database: | - |
| Link(s) to API / SPARQL endpoint | - |
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Link to LSDB Archive:
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Link to MEDALS Database list:
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Link to TogoTV:
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Link to FAIRsharing:
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Similar databases:
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Cassava Full-Length cDNA Database Striga hermonthica EST Database Daphnia Water Flea Genome Database PEDE Raphanus sativus Genome DataBase PigGIS KaTomicsDB Soybean Marker Database ARSA FLJ Human cDNA Database |
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Record maintainer
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Integbio Database Catalog |
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Record source:
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Date of creation of this record:
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2015-03-10 |
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Last update date of this record:
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2015-03-10 |
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Record license:
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Creative Commons CC0 license |