Trips-Viz
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| Alternative name: | - |
| URL: | |
| Database maintenance site: | University College Cork |
| Country/Region: | Ireland |
| Database description: | Trips-viz is a database for Ribosome profiling (Ribo-seq) data that have been produced using publicly available ribosome profiling and corresponding RNA-seq datasets from SRA. Trip-Viz provides a set of graphical analysis tools to understand a Ribo-Seq result and to compare translated features across different samples of Ribo-Seq, which are able to use for; 1) interactive visualization of an aggregate of ribosome profiling data at subcodon resolution in the context of single transcripts, 2) plotting data obtained from multiple different samples on the same transcript, 3) getting meta-information from an entire dataset, aggregating information from multiple transcripts to assess the quality of datasets, 4) finding genes whose expression is significantly up/down-regulated relative to others. Users can also upload and analyze their own data. |
| Organism(s) covered: | , , , , , , , |
| Tag - Target: | Genome/Gene, RNA |
| Tag - Information type: | Expression |
| Reference(s) - PubMed ID/DOI: | PubMed ID: DOI: |
| Language(s): | English |
| Operational status: | Active |
| Link(s) to Downloadable data: | http://trips.ucc.ie/downloads/ |
| Link(s) to Metadata of downloadable data: | - |
| Link(s) to Terms of use: | - |
| Link(s) to "How to use": | - |
| Contact information of database: | http://trips.ucc.ie/contactus/ |
| Link(s) to API / SPARQL endpoint | - |
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Link to LSDB Archive:
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Link to MEDALS Database list:
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Link to TogoTV:
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Link to FAIRsharing:
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Similar databases:
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BloodSpot microRNA.org Database of small human non-coding RNAs CistromeDB doRiNA GeneProf GWIPS-viz fRNAdb (Archive) Plant snoRNA Database |
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Record maintainer
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Integbio Database Catalog |
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Record source:
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Date of creation of this record:
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2020-04-22 |
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Last update date of this record:
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2020-04-22 |
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Record license:
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Creative Commons CC0 license |