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Plant snoRNA Database

info ID: NBDC00169
info Database name: Plant snoRNA Database
info Alternative name: -
info URL: 
info Database maintenance site: James Hutton Institute
info Country/Region: United Kingdom
info Database description: Plant snoRNA Version 1.2 is a database that combines information of the Arabidopsis genome gathered during 3 separate computerbased searches for box C/D snoRNA genes with the results from ncRNA studies added.
This list of snoRNAs were applied to the genomes of a variety of non-Arabidopsis plant species and thus assisted in the identification of more or less 250 genes from these species.
The database includes the alignment sequences of these 250 genes.
The content of the database is presented in a series of tables.
The sequences can be downloaded in FASTA file format.
info Organism(s) covered: Arabidopsis thaliana (), Chlamydomonas reinhardtii (), Medicago truncatula (), Solanum lycopersicum (), Lycopersicon hirsutum f. glabratum (), Solanum tuberosum (), Beta vulgaris (), Mesembryanthemum crystallinum (), Citrus unshiu (), Triticum aestivum (), Zea mays (), Hordeum vulgare (), Sorghum bicolor (), Oryza sativa (), Pinus taeda (), Physcomitrella patens (), Ceratodon purpureus ()
info Tag - Target: RNA
info Tag - Information type: Sequence, Expression
info Reference(s) - PubMed ID/DOI: 
PubMed ID:
12520043
DOI:
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PubMed ID:
10829025
DOI:
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PubMed ID:
11469857
DOI:
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PubMed ID:
11780637
DOI:
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PubMed ID:
11266566
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PubMed ID:
10380797
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PubMed ID:
9312032
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PubMed ID:
9578473
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PubMed ID:
9596627
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PubMed ID:
12136108
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PubMed ID:
11706161
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PubMed ID:
223845
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PubMed ID:
4447901
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PubMed ID:
8799814
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PubMed ID:
9664033
DOI:
-
info Language(s): English
info Operational status: Inactive
info Link(s) to Downloadable data: -
info Link(s) to Metadata of downloadable data: -
info Link(s) to Terms of use: -
info Link(s) to "How to use": -
info Contact information of database: -
info Link(s) to API / SPARQL endpoint -
info Link to LSDB Archive: -
info Link to MEDALS Database list: -
info Link to TogoTV: -
info Link to FAIRsharing: -
info Similar databases: Database of small human non-coding RNAs
Noncoding RNA database
microRNA.org
snoRNABase
fRNAdb (Archive)
RDP
Ares lab Yeast Intron Database
FANTOM6
5S Ribosomal RNA Database
info Record maintainer Integbio Database Catalog
info Record source: integbio logo
info Date of creation of this record: 2013-06-17
info Last update date of this record: 2021-01-12
info Record license: Creative Commons CC0 license