FusionGDB2: Fusion Gene annotation DataBase
 ID: | |
| Database name: | |
| Alternative name: | |
| URL: | |
| Database maintenance site: | UTHealth (University of Texas Health Science Center at Houston) |
| Country/Region: | United States |
| Database description: | FusionGDB is a database about fusion gene annotation. This database collects data of clinically relevant fusion genomes from three representative fusion gene resources: the improved database of chimeric transcripts and RNA-seq data (ChiTaRS 3.1), an integrative resource for cancer-associated transcript fusions (TumorFusions), and The Cancer Genome Atlas (TCGA). Gene assessment across pan-cancer fusion genes, open reading frame (ORF) assignment, and protein domain retention search based on multiple isoform gene structure with multiple break points were performed for the collected fusion genomes. It also provides the fusion transcript and amino acid sequences for each break point and gene isoforms. Each entry contains multiple annotation such as gene summary, assessment scores of each gene in pan-cancer, biological process gene ontologies, functional description, retention information and protein-protein interaction (PPI), related drugs and diseases through six categories. |
| Organism(s) covered: | |
| Tag - Target: | Genome/Gene, DNA, Health/Disease |
| Tag - Information type: | Sequence, Expression, Interaction/Pathway |
| Reference(s) - PubMed ID/DOI: | PubMed ID: DOI: PubMed ID: DOI: |
| Language(s): | English |
| Operational status: | Active |
| Link(s) to Downloadable data: | https://compbio.uth.edu/FusionGDB2/download.html |
| Link(s) to Metadata of downloadable data: | - |
| Link(s) to Terms of use: | - |
| Link(s) to "How to use": | https://compbio.uth.edu/FusionGDB2/help.html |
| Contact information of database: | https://compbio.uth.edu/FusionGDB2/contact.html |
| Link(s) to API / SPARQL endpoint | - |
|
Link to LSDB Archive:
|
- |
|
Link to MEDALS Database list:
|
- |
|
Link to TogoTV:
|
- |
|
Link to FAIRsharing:
|
- |
|
Similar databases:
|
Transmembrane Helices in Genome Sequences CREEDS MSigDB Oncomine PRODORIC FlyFactorSurvey HACER RhesusBase Autism Knowledgebase Tumor Associated Gene database |
|
Record maintainer
|
Integbio Database Catalog |
|
Record source:
|
|
|
Date of creation of this record:
|
2019-10-23 |
|
Last update date of this record:
|
2022-07-21 |
|
Record license:
|
Creative Commons CC0 license |