MSigDB: Molecular Signatures Database
 ID: | |
| Database name: | |
| Alternative name: | |
| URL: | |
| Database maintenance site: | Broad Institute of Harvard and MIT, UCSD (University of California San Diego) |
| Country/Region: | United States |
| Database description: | MSigDB is a collection of annotated gene sets for use with Enrichment Analysis (GSEA) software which is a computational method that determines whether an a priori defined set of genes shows statistically significant, concordant differences between two biological states. It contains 9 major collections of the gene sets; H: hallmark gene sets C1: positional gene sets C2: curated gene sets C3: regulatory target gene sets C4: computational gene sets C5: ontology gene sets C6: oncogenic signature gene sets C7: immunologic signature gene sets C8: cell type signature gene sets |
| Organism(s) covered: | |
| Tag - Target: | Genome/Gene, Health/Disease |
| Tag - Information type: | Expression, Interaction/Pathway |
| Reference(s) - PubMed ID/DOI: | PubMed ID: DOI: |
| Language(s): | English |
| Operational status: | Active |
| Link(s) to Downloadable data: | http://www.gsea-msigdb.org/gsea/login.jsp#msigdb |
| Link(s) to Metadata of downloadable data: | - |
| Link(s) to Terms of use: | http://www.gsea-msigdb.org/gsea/license_terms_list.jsp |
| Link(s) to "How to use": | - |
| Contact information of database: | http://www.gsea-msigdb.org/gsea/contact.jsp |
| Link(s) to API / SPARQL endpoint | - |
|
Link to LSDB Archive:
|
- |
|
Link to MEDALS Database list:
|
- |
|
Link to TogoTV:
|
- |
|
Link to FAIRsharing:
|
- |
|
Similar databases:
|
PODC ALCOdb CREEDS Open Regulatory Annotation Oncomine UCSC Xena Autism Knowledgebase RhesusBase National Microbial Pathogen Data Resource ED-Genes |
|
Record maintainer
|
Integbio Database Catalog |
|
Record source:
|
|
|
Date of creation of this record:
|
2020-12-23 |
|
Last update date of this record:
|
2020-12-23 |
|
Record license:
|
Creative Commons CC0 license |