ProteomicsDB: PrDB
 ID: | |
| Database name: | |
| Alternative name: | |
| URL: | |
| Database maintenance site: | Technical University of Munich |
| Country/Region: | Germany |
| Database description: | ProteomicsDB is a protein-centric in-memory database for the exploration of large collections of quantitative mass spectrometry-based proteomics data. ProteomicsDB was first released in 2014 to enable the interactive exploration of the first draft of the human proteome. To date, it contains quantitative data from 78 projects totalling over 19k LC-MS/MS experiments. A standardized analysis pipeline enables comparisons between multiple datasets to facilitate the exploration of protein expression across hundreds of tissues, body fluids and cell lines. We recently extended the data model to enable the storage and integrated visualization of other quantitative omics data. This includes transcriptomics data from e. g. NCBI GEO, protein-protein interaction information from STRING, functional annotations from KEGG, drug-sensitivity/selectivity data from several public sources and reference mass spectra from the ProteomeTools project. The extended functionality transforms ProteomicsDB into a multi-purpose resource connecting quantification and meta-data for each protein. The rich user interface helps researchers to navigate all data sources in either a protein-centric or multi-protein-centric manner. Several options are available to download data manually, while our application programming interface enables accessing quantitative data systematically. |
| Organism(s) covered: | |
| Tag - Target: | Protein |
| Tag - Information type: | Sequence, Method, Expression, Distribution, Interaction/Pathway |
| Reference(s) - PubMed ID/DOI: | PubMed ID: DOI: |
| Language(s): | English |
| Operational status: | Active |
| Link(s) to Downloadable data: | - |
| Link(s) to Metadata of downloadable data: | - |
| Link(s) to Terms of use: | - |
| Link(s) to "How to use": | - |
| Contact information of database: | - |
| Link(s) to API / SPARQL endpoint | - |
|
Link to LSDB Archive:
|
- |
|
Link to MEDALS Database list:
|
- |
|
Link to TogoTV:
|
- |
|
Link to FAIRsharing:
|
https://fairsharing.org/10.25504/FAIRsharing.6y9h91 |
|
Similar databases:
|
Human Proteinpedia Interferome Translocatome PhaSepDB Soybean Proteome Database Compartmentalized Protein-Protein Interaction CropPAL SubtiWiki SAGD MatrisomeDB |
|
Record maintainer
|
See the corresponding part in the FAIRsharing record. |
|
Record source:
|
 (2018-12-21)
|
|
Date of creation of this record:
|
2019-03-28 |
|
Last update date of this record:
|
2019-06-13 |
|
Record license:
|
Creative Commons Attribution and Share-alike (CC-BY-SA) International 4.0 license |