Inactive
(Over 14 days)
(Over 14 days)
CUBE-DB
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| Database name: | |
| Alternative name: | - |
| URL: | |
| Database maintenance site: | Evolution of Protein Structure and Function Group, Biomolecular Modelling and Design Division, Bioinformatics Institute |
| Country/Region: | Singapore |
| Database description: | Detection of functional divergence in human protein families. Cube-DB is a database of pre-evaluated conservation and specialization scores for residues in paralogous proteins belonging to multi-member families of human proteins. Protein family classification follows (largely) the classification suggested by HUGO Gene Nomenclature Committee. Sets of orthologous protein sequences were generated by mutual-best-hit strategy using full vertebrate genomes available in Ensembl. The scores, described on documentation page, are assigned to each individual residue in a protein, and presented in the form of a table (html or downloadable xls formats) and mapped, when appropriate, onto the related structure (Jmol, Pymol, Chimera). |
| Organism(s) covered: | |
| Tag - Target: | Genome/Gene |
| Tag - Information type: | Sequence |
| Reference(s) - PubMed ID/DOI: | PubMed ID: DOI: PubMed ID: DOI: |
| Language(s): | English |
| Operational status: | Inactive |
| Link(s) to Downloadable data: | - |
| Link(s) to Metadata of downloadable data: | - |
| Link(s) to Terms of use: | - |
| Link(s) to "How to use": | - |
| Contact information of database: | - |
| Link(s) to API / SPARQL endpoint | - |
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Link to LSDB Archive:
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Link to MEDALS Database list:
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Link to TogoTV:
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Link to FAIRsharing:
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https://fairsharing.org/10.25504/FAIRsharing.aqb4ne |
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Similar databases:
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Eucalyptus camaldulensis Genome Database HGD SoybeanTFDB IMGT/LIGM-DB Burkholderia Genome DB GENCODE The Vertebrate Genome Annotation Database IES MDS Database Neal's DNA Mutation Site |
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Record maintainer
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See the corresponding part in the FAIRsharing record. |
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Record source:
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 (2018-12-21)
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Date of creation of this record:
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2019-03-28 |
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Last update date of this record:
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2019-06-24 |
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Record license:
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Creative Commons Attribution and Share-alike (CC-BY-SA) International 4.0 license |