Big Data Nucleic Acid Simulations Database: BIGNASim
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| Database maintenance site: | ICREA (Cataland Institution for Research and Advanced Studies), BSC (Barcelona Supercomputing Center), Barcelona University, Institute for Research in Biomedicine |
| Country/Region: | Spain |
| Database description: | Atomistic Molecular Dynamics Simulation Trajectories and Analyses of Nucleic Acid Structures. BIGNASim is a complete platform to hold and analyse nucleic acids simulation data, based on two noSQL database engines: Cassandra to hold trajectory data and MongoDB for analyses and metadata. Most common analyses (helical parameters, NMR observables, sitffness, hydrogen bonding and stacking energies and geometries) are pre-calculated for the trajectories available and shown using the interactive visualization offered by NAFlex interface. Additionaly, whole trajectories, fragments or meta-trajectories can be analysed or downloaded for further in-house processing. |
| Organism(s) covered: | |
| Tag - Target: | DNA |
| Tag - Information type: | Sequence, 3D structure |
| Reference(s) - PubMed ID/DOI: | PubMed ID: DOI: |
| Language(s): | English |
| Operational status: | Active |
| Link(s) to Downloadable data: | - |
| Link(s) to Metadata of downloadable data: | - |
| Link(s) to Terms of use: | - |
| Link(s) to "How to use": | - |
| Contact information of database: | - |
| Link(s) to API / SPARQL endpoint | - |
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Link to LSDB Archive:
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Link to MEDALS Database list:
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Link to TogoTV:
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Link to FAIRsharing:
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https://fairsharing.org/10.25504/FAIRsharing.k5a3yt |
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Similar databases:
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Transmembrane Helices in Genome Sequences non-B DB ProNuc BAliBASE PDBWiki MolMovDB Proteopedia Database Of Local Biomolecular Conformers DNAproDB InterEvol database |
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Record maintainer
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See the corresponding part in the FAIRsharing record. |
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Record source:
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 (2018-12-21)
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Date of creation of this record:
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2019-03-28 |
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Last update date of this record:
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2024-07-28 |
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Record license:
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Creative Commons Attribution and Share-alike (CC-BY-SA) International 4.0 license |