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Big Data Nucleic Acid Simulations Database:  BIGNASim

info ID: NBDC02009
info Database name: Big Data Nucleic Acid Simulations Database
info Alternative name: BIGNASim
info URL: 
info Database maintenance site: ICREA (Cataland Institution for Research and Advanced Studies), BSC (Barcelona Supercomputing Center), Barcelona University, Institute for Research in Biomedicine
info Country/Region: Spain
info Database description: Atomistic Molecular Dynamics Simulation Trajectories and Analyses of Nucleic Acid Structures.
BIGNASim is a complete platform to hold and analyse nucleic acids simulation data, based on two noSQL database engines: Cassandra to hold trajectory data and MongoDB for analyses and metadata. Most common analyses (helical parameters, NMR observables, sitffness, hydrogen bonding and stacking energies and geometries) are pre-calculated for the trajectories available and shown using the interactive visualization offered by NAFlex interface. Additionaly, whole trajectories, fragments or meta-trajectories can be analysed or downloaded for further in-house processing.
info Organism(s) covered: All ()
info Tag - Target: DNA
info Tag - Information type: Sequence, 3D structure
info Reference(s) - PubMed ID/DOI: 
PubMed ID:
26612862
DOI:
-
info Language(s): English
info Operational status: Active
info Link(s) to Downloadable data: -
info Link(s) to Metadata of downloadable data: -
info Link(s) to Terms of use: -
info Link(s) to "How to use": -
info Contact information of database: -
info Link(s) to API / SPARQL endpoint -