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The Improved Database Of Chimeric Transcripts and RNA-Seq Data:  ChiTaRS

info ID: NBDC01940
info Database name: The Improved Database Of Chimeric Transcripts and RNA-Seq Data
info Alternative name: ChiTaRS
info URL: 
info Database maintenance site: -
info Country/Region: Israel, Spain
info Database description: The ESTs and mRNAs from GenBank have been used to identify chimeric RNAs of two or more different genes. By analyzing thousands of chimeric ESTs by RNA sequencing, we found that the expression level of chimeric ESTs is generally low and they are highly tissue specific in normal cells. Here we present the improved version of the ChiTaRS database (ChiTaRS-5.0) with more then (66,243 + 41,584 + 3,052 + 19 + 67 + 20 + 292 + 305) = 111,582 chimeric transcripts in humans, mice, fruit flies, rats, zebrafishes, cows, pigs, and yeast. In the current version we extended the experimental data evidence as well as included a novel type of the sense-antisense chimeric transcripts of the same gene confirmed experimentally by RT-PCR, qPCR, RNA-sequencing and mass-spec peptides. In addition, we collected 23,167 human cancer breakpoints with the expression levels of chimeric RNAs confirmed by the paired-end RNA-sequencing experiments in different tissues in humans, mice and fruit flies.
info Organism(s) covered: Bos taurus (), Danio rerio (), Drosophila melanogaster (), Homo sapiens (), Mus musculus (), Rattus norvegicus (), Saccharomyces cerevisiae (), Sus scrofa ()
info Tag - Target: cDNA/EST, RNA, Health/Disease
info Tag - Information type: Sequence, Expression
info Reference(s) - PubMed ID/DOI: 
PubMed ID:
23143107
DOI:
-
PubMed ID:
25414346
DOI:
-
PubMed ID:
27899596
DOI:
-
info Language(s): English
info Operational status: Inactive
info Link(s) to Downloadable data: -
info Link(s) to Metadata of downloadable data: -
info Link(s) to Terms of use: -
info Link(s) to "How to use": -
info Contact information of database: -
info Link(s) to API / SPARQL endpoint -
info Link to LSDB Archive: -
info Link to MEDALS Database list: -
info Link to TogoTV: -
info Link to FAIRsharing:
info Similar databases: RefEx
BioGPS
AceView genes
DB-AT
Plant snoRNA Database
microRNA.org
AOE
fRNAdb (Archive)
info Record maintainer
info Record source: FAIRsharing Logo(2018-12-21)
info Date of creation of this record: 2019-03-28
info Last update date of this record: 2024-07-28
info Record license: Creative Commons Attribution and Share-alike (CC-BY-SA) International 4.0 license