Echinobase
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| Database name: | |
| Alternative name: | - |
| URL: | |
| Database maintenance site: | Center for Computational Regulatory Genomics, Beckman Institute |
| Country/Region: | United States |
| Database description: | Echinobase is a comparative genomics platform for the echinoderm clade. It contains information on genomes of Strongylocentrotus purpuratus, Lytechinus variegatus, Patiria miniata, Parastichopus parvamensis and Ophiothrix spiculata. It also contains transcriptomes for these and other echinoderms. This database allows to browsing or searching using JBrowse (Genome Browser), BLAST tools, BAC Table, etc. |
| Organism(s) covered: | |
| Tag - Target: | Genome/Gene, Organism |
| Tag - Information type: | Sequence, Expression, Ontology/Terminology/Nomenclature |
| Reference(s) - PubMed ID/DOI: | PubMed ID: DOI: |
| Language(s): | English |
| Operational status: | Active |
| Link(s) to Downloadable data: | https://www.echinobase.org/other/static-echinobase/ftpDatafiles.jsp |
| Link(s) to Metadata of downloadable data: | - |
| Link(s) to Terms of use: | https://www.echinobase.org/other/static-echinobase/aboutMOD.jsp |
| Link(s) to "How to use": | - |
| Contact information of database: | https://www.echinobase.org/other/static-echinobase/contactUs.jsp |
| Link(s) to API / SPARQL endpoint | - |
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Link to LSDB Archive:
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Link to MEDALS Database list:
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Link to TogoTV:
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Link to FAIRsharing:
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Similar databases:
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AgBase LegumeIP SpBase Banana Genome Hub Genome Database for Rosaceae TrichDB Toxoplasma Genomics Resource IMORI TriTrypDB PlasmoDB |
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Record maintainer
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Integbio Database Catalog |
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Record source:
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Date of creation of this record:
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2015-06-30 |
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Last update date of this record:
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2020-10-04 |
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Record license:
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Creative Commons CC0 license |