UMASS Amherst Yeast snoRNA Database
 ID: | |
| Database name: | |
| Alternative name: | - |
| URL: | |
| Database maintenance site: | University of Massachusetts Amherst |
| Country/Region: | United States |
| Database description: | The yeast snoRNA database is a comprehensive database for small nucleolar RNAs (snoRNAs) from the yeast Saccharomyces cerevisiae. It allows to visualize the positions of pseudouridines, 2'-O-methylations, and base methylations in three-dimensional space in the ribosome and also in linear and secondary structure formats of ribosomal RNA. It provides additional perspective on where the modifications occur relative to functional regions within the rRNA and relative to other nearby modifications. The database also includes details of the base pairing of snoRNAs with target RNAs, genomic organization of the yeast snoRNA genes, and information on corresponding snoRNAs and modifications in other model organisms. |
| Organism(s) covered: | |
| Tag - Target: | RNA |
| Tag - Information type: | Phenotype, Sequence, Classification |
| Reference(s) - PubMed ID/DOI: | PubMed ID: DOI: |
| Language(s): | English |
| Operational status: | Active |
| Link(s) to Downloadable data: | - |
| Link(s) to Metadata of downloadable data: | - |
| Link(s) to Terms of use: | - |
| Link(s) to "How to use": | - |
| Contact information of database: | - |
| Link(s) to API / SPARQL endpoint | - |
|
Link to LSDB Archive:
|
- |
|
Link to MEDALS Database list:
|
- |
|
Link to TogoTV:
|
- |
|
Link to FAIRsharing:
|
- |
|
Similar databases:
|
snOPY Rfam Nucleic Acid Phylogenetic Profile snoRNABase AREsite Noncoding RNA database LncACTdb 3.0 Plant snoRNA Database miRo2 microRNA.org |
|
Record maintainer
|
Integbio Database Catalog |
|
Record source:
|
|
|
Date of creation of this record:
|
2013-06-17 |
|
Last update date of this record:
|
2013-06-17 |
|
Record license:
|
Creative Commons CC0 license |