Description: PmiRKB (Plant microRNA Knowledge Base) is a database collecting information on miRNAs from Arabidopsis thaliana and Oryza sativa.The functional modules that are provided are MiR...Show Details...
Description: miRTarBase Version 3.5 is a database that contains information about miRNA-target interactions (MTIs) obtained by manual search of scientific literature with data on 4867 miRNA-...Show Details...
Database maintenance site: Institute for Molecular Bioscience, The University of Queensland
Organism(s) covered:Eukaryota
Description: lncRNAdb is a database providing comprehensive annotations of long non-coding RNAs (lncRNAs) in eukaryotes. Each record contains referenced information about the RNA, including ...Show Details...
Database maintenance site: Institute of Cytology and Preventive Oncology
Organism(s) covered:Homo sapiens
Description: CCGD is a manually curated collection of experimenatlly validated genes which are thought to be involved in the different stages of cervical carcinogenesis. Each entry contains ...Show Details...
Description: COMBREX is a database of experimentally determined and computationally predicted functions for bacterial and archaeal genomes. This database presently consists of genes from ove...Show Details...
Database maintenance site: RIKEN Quantitative Biology Center
Organism(s) covered:Caenorhabditis elegans
Description: WDDD is a database of C. elegans development. The database contains images and quantitative cell division data. Data were collected from RNAi screens of developing worms to desc...Show Details...
Database maintenance site: Institute of Physics, Polish Academy of Sciences
Organism(s) covered:
Description: BSDB is a database that houses information about the mechanical stretching of proteins.Both ends of a protein molecule are attached to a spring, and the free end of one spring i...Show Details...
Inactive (Over 14 days)
BriX
Database maintenance site: Flanders Institute of Biotechnology, Free University of Brussels
Database maintenance site: Shanghai Jiao Tong University
Organism(s) covered:
Description: The AlloSteric Database (ASD) provides a central resource for the display, search and analysis of structure, function and related annotation for allosteric molecules, which are ...Show Details...
Database maintenance site: Institute of Theoretical Chemistry, University of Vienna
Organism(s) covered:Homo sapiens | Mus musculus
Description: AREsite is a database of the investigation of AU-rich elements (ARE) in vertebrate mRNA UTR sequences. Thisdatabase allows detailed investigation of functional elements by analy...Show Details...
Description: This is an database of genomes and results of functional genomic analysis of parasitic amoeba such as Entamoeba histolytica and Acanthamoeba, which is a family database of the E...Show Details...
Database maintenance site: AIST (National Institute of Advanced Industrial Science and Technology)
Organism(s) covered:Homo sapiens
Description: CellMontage is a system to search and analyze microarray data. The system enables users to compare gene expression profiles with different platforms, and to find gene expression...Show Details...
Closed
Mutation Database
Database maintenance site: NBDC (Japan Science and Technology Agency Department of NBDC Program)
Organism(s) covered:Homo sapiens
Description: The Mutation Database is a repository for information about genes that are causative for or implicated in ALS, PD, ALD, and HSP. A list of genes is provided for each disease and...Show Details...
Description: PaGE-OM (Phenotype and Genotype-Object Model) is a data model with which PaGE-OM can be applied to other phenotype and genotype databases to allow studies of correlations betwee...Show Details...
Closed
TMBETA-DISC
Database maintenance site: AIST (National Institute of Advanced Industrial Science and Technology)
Database maintenance site: JT Biohistory Research Hall
Organism(s) covered:
Description: Quarterly journal "Biohistory" is a repository of a quarterly magazine; "Biohistory" published by JT Biohistory Research Hall. Biohistory has an annual theme, and each issue con...Show Details...
Database maintenance site: National Institute of Advanced Industrial Science and Technology, Biomedicinal Information Research Center
Organism(s) covered:Homo sapiens
Description: PCDq is a human protein complex database with quality index. The protein complex quality index (CQI) describes evidence levels of the protein members of protein complexes. Human...Show Details...
Database maintenance site: National Institute of Advanced Industrial Science and Technology, Biomedicinal Information Research Center
Organism(s) covered:Homo sapiens
Description: RAvariome is a human genetic variant database for the autoimmune inflammatory disease, Rheumatoid Arthritis (RA). This database provides reproducible associations between geneti...Show Details...
Database maintenance site: Okayama University Institute of Plant Science and Resources
Organism(s) covered:Embryophyta
Description: Naturalized Plants in Japan ~Seed-Image database~ is an image database of naturalized alien plant seeds recorded in Japan. This database contains plant images, information on mo...Show Details...
Description: The Autophagy Database aims to provide researchers with new information about autophagy-related proteins and their structure and also to make this data freely available to the w...Show Details...
Database maintenance site: AIST (National Institute of Advanced Industrial Science and Technology)
Organism(s) covered:Homo sapiens
Description: SAHG is a database of protein structure predictions. The database contains predictions for proteins from every ORF found in the human genome based on RefSeq sequences and was co...Show Details...
Database maintenance site: DBCLS (Database Center for Life Science, Research Organization of Information and Systems)
Organism(s) covered:
Description: Allie Portal is a portal site of Allie; an online search service for abbreviations and long forms in life science. Allie Portal consists of following 3 contents.1. Allie; an onl...Show Details...
Closed
HLA DB: HLA database
Database maintenance site: NBDC (Japan Science and Technology Agency Department of NBDC Program)
Organism(s) covered:Homo sapiens
Description: HLA DB is a database of disease and haplotype information for the human HLA region. The database consists of HLA haplotype sequences that can be searched and aligned against eac...Show Details...
Closed
Human Variation DB: human genome variation database
Database maintenance site: NBDC (Japan Science and Technology Agency Department of NBDC Program)
Organism(s) covered:Homo sapiens
Description: Human Variation Database is a collection of data regarding genomic variation. It contains variation information from a variety of published sources and captures all manner of ge...Show Details...
Closed
CNV association DB: copy number variation association database
Database maintenance site: NBDC (Japan Science and Technology Agency Department of NBDC Program)
Organism(s) covered:Homo sapiens
Description: The CNV Association database is a portal site for exploring associations between CNVs and disease. Currently, the database hosts disease-CNV association data for panic disorder....Show Details...
Closed
CNV control DB: copy number variation database
Database maintenance site: NBDC (Japan Science and Technology Agency Department of NBDC Program)
Organism(s) covered:Homo sapiens
Description: The CNV Control database hosts copy number data deposited and collected from published studies. The database contains CNV data from 160 Japanese individuals obtained on Affymetr...Show Details...
Database maintenance site: NBDC (Japan Science and Technology Agency Department of NBDC Program)
Organism(s) covered:Homo sapiens
Description: The SNP Control database is a collection of data from a large number of individuals. The data can be used as sample control data to determine statistical parameters in determini...Show Details...
Database maintenance site: Kyoto University Institute for Chemical Research Bioinformatics Center
Organism(s) covered:Homo sapiens
Description: KEGG MEDICUS is an integrated database of diseases, drugs and other health-related substances. KEGG MEDICUS contains resources of KEGG DISEASE (diseases and genes), KEGG DRUG (d...Show Details...
Closed
Metagenome.jp (Human Meta BodyMap)
Database maintenance site: Tokyo Institute of Technology
Organism(s) covered:Homo sapiens | Bacteria
Description: The Metagenome Database is a database of sequence information from microbial sequencing projects. The database contains raw sequences and alignments from human metagenome projec...Show Details...
Database maintenance site: Stanford Center for Biomedical Informatics Research
Organism(s) covered:Bacteria
Description: MEO is a repository of ontology describing microbial habitats maintained by Tokyo Institute of Technology, Department of Biological Information. This repository consists of the ...Show Details...
Database maintenance site: National Institute of Genetics
Organism(s) covered:Bacteria | Archaea
Description: This is a database of gene, strain, and environmental interaction in microorganisms. Users can search these data from a single search window based on semantic web technologies.Show Details...
Closed
BioLOD.org: Biophenome Linked Open Databases
Database maintenance site: RIKEN Yokohama Institute
Organism(s) covered:
Description: BioLOD.org is an integrated database of biological open data based on semantic web technology standards and maintained by RIKEN BASE (Bioinformatics And Systems Engineering Divi...Show Details...
Database maintenance site: RIKEN (The Institute of Physical and Chemical Research)
Organism(s) covered:
Description: Cell lines in RIKEN BioResource Center is a database of resource information maintained by RIKEN BRC (RIKEN BioResource Center) and collaborative institutes. Each entry contains...Show Details...
Database maintenance site: RIKEN (The Institute of Physical and Chemical Research)
Organism(s) covered:Mus musculus
Description: Mouse strain in RIKEN BioResource Center is a database of resource information maintained by RIKEN BioResource Center (RIKEN BRC) and collaborative institutes. Each entry contai...Show Details...
Database maintenance site: National Institute of Genetics
Organism(s) covered:
Description: Metabolomics.JP is a portal site for metabolomics information maintained by Arita Laboratory, National Institute of Genetics. This portal site contains wiki-based databases with...Show Details...
Database maintenance site: Nara Institute of Science and Technology Graduate School of Information Science
Organism(s) covered:
Description: The Metabolite Activity database collects information on how metabolites affect various organisms. The database connects compound IDs, names, which organisms they effect, how th...Show Details...
Description: GlycoNAVI is a web site for carbohydrate research. It consist of the 'GlycoNAVI DataBase' for molecular information of carbohydrates, and chemical reactions of carbohydrate synt...Show Details...
Database maintenance site: AIST (National Institute of Advanced Industrial Science and Technology)
Organism(s) covered:
Description: JCGGDB Report is a collection of minireviews about the latest information for passways and the glycoscience of the carbohydrate chain and its related genes. It contains reports ...Show Details...
Database maintenance site: AIST (National Institute of Advanced Industrial Science and Technology)
Organism(s) covered:
Description: KOmouseDB is a collection of phenotype information of mice which have knockouts in genes relevant for glycan-related or glycoprotein. Each entry contains the method of KO, genes...Show Details...
Database maintenance site: AIST (National Institute of Advanced Industrial Science and Technology)
Organism(s) covered:Homo sapiens
Description: GDGDB is a database of the disease caused by mutations of glycan-related genes (glycosyltransferases, glycosidase, donor substrate synthesis enzymes, etc.). Each entry contains ...Show Details...
Database maintenance site: AIST (National Institute of Advanced Industrial Science and Technology)
Organism(s) covered:
Description: JMSDB is a database of monosaccharide structures. The database contains the formula, name, and several standard nomenclatures for a variety of monosaccharides and provides struc...Show Details...
Database maintenance site: AIST (National Institute of Advanced Industrial Science and Technology)
Organism(s) covered:
Description: TuMaRdb is a database of tumor biomarkers: molecular entities and diseases they have been linked to. Users can select by marker or disease and view particulars of published rela...Show Details...
Database maintenance site: AIST (National Institute of Advanced Industrial Science and Technology)
Organism(s) covered:
Description: GlycoPOD is a collection of protocols for performing experiments on glycans. The database contains protocols for isolating glycans, analyses for specific types of glycans, and i...Show Details...
Database maintenance site: AIST (National Institute of Advanced Industrial Science and Technology)
Organism(s) covered:
Description: PACDB is a curated database of pathogens (e.g. bacteria, fungus, toxin and virus) adhering to carbohydrates expressed on the cell surface of host animals or plants. It provides ...Show Details...
Database maintenance site: AIST (National Institute of Advanced Industrial Science and Technology)
Organism(s) covered:
Description: This is a database of detailed information about sugar chains, with structure information cross-linked from several databases. Various search functions are available.Show Details...
Database maintenance site: AIST (National Institute of Advanced Industrial Science and Technology)
Organism(s) covered:
Description: This site is a search tool of JCGGDB which is a database of glycan-related data in Japan. It allows to search glycan structures using the monosaccharide symbol defined by the Co...Show Details...
Database maintenance site: Osaka University Institute for Protein Research
Organism(s) covered:
Description: PREIMS is a database containing various experimental protocols, which have been developed during the Target Proteins Research Project (TPRP) promoted by the Ministry of educatio...Show Details...
Database maintenance site: National Institute of Genetics
Organism(s) covered:
Description: AT Atlas is a comprehensive database for achievements by research groups of "Protein Production", "Structural Analysis" and "Chemical Regulation"of Targeted Proteins Research Pr...Show Details...
Database maintenance site: National Institute of Genetics
Organism(s) covered:Homo sapiens
Description: TP Atlas is a comprehensive database for achievements of Targeted Proteins Research Program which includes 35 TP projects ranging from signal transduction networks to enzymatic ...Show Details...
Database maintenance site: Targeted Proteins Research Program
Organism(s) covered:
Description: TP Structure Gallery is a list of three-dimensional structures of proteins which were analyzed in the Targeted Proteins Research Program (TPRP) that is a national project promot...Show Details...
