oRNAment: o RNA motifs enrichment in complete transcriptomes
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| Database maintenance site: | Lécuyer Lab, Institut de Recherches Cliniques de Montéral |
| Country/Region: | Canada |
| Database description: | oRNAment is a database of putative RBP (RNA-binding-protein) binding site instances in coding and non-coding RNA in five species. For each RBP, this database mainly provides an organism it is derived from, the coding gene, the name and position on the genome of its motif, and similarity score to the canonical motif. Users can search from an organism, RBP name, attributes of gene and mRNA, and a region of a motif. Search results and all data are downloadable. |
| Organism(s) covered: | , , , , |
| Tag - Target: | Genome/Gene, RNA, Protein |
| Tag - Information type: | Sequence, Classification, Interaction/Pathway |
| Reference(s) - PubMed ID/DOI: | PubMed ID: DOI: |
| Language(s): | English |
| Operational status: | Active |
| Link(s) to Downloadable data: | https://rnabiology.ircm.qc.ca/oRNAment/downloads/ |
| Link(s) to Metadata of downloadable data: | https://rnabiology.ircm.qc.ca/oRNAment/downloads/ |
| Link(s) to Terms of use: | - |
| Link(s) to "How to use": | https://rnabiology.ircm.qc.ca/oRNAment/tutorial/ |
| Contact information of database: | https://rnabiology.ircm.qc.ca/oRNAment/tutorial/ |
| Link(s) to API / SPARQL endpoint | - |
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Link to LSDB Archive:
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Link to MEDALS Database list:
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Link to TogoTV:
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Link to FAIRsharing:
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Similar databases:
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RBPDB ENPD cis-Regulatory Element Database Blocks AREsite Eukaryotic Linear Motifs STRING snOPY Networks of Functional Coupling of proteins MnM |
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Record maintainer
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Integbio Database Catalog |
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Record source:
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Date of creation of this record:
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2021-08-24 |
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Last update date of this record:
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2024-05-15 |
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Record license:
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Creative Commons CC0 license |