Pancan-meQTL: Methylation quantitative trait loci in cancer
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| Database maintenance site: | Huazhong University of Science and Technology, UTHealth (University of Texas Health Science Center at Houston) |
| Country/Region: | China, United States |
| Database description: | Pancan-meQTL is a database for systematically prediction about the effects of SNPs on methylation levels of human genome. It provides cis-meQTLs (SNPs affect local methylation levels of CpG sties) and trans-meQTLs (SNPs affect distant methylation levels of CpG sites) across cancer types by using thousands of genotype and methylation data from The Cancer Genome Atlas (TCGA). Users can browse or search following information; 1) cis-meQTLs and trans-meQTLs across different cancer types 2) meQTLs associated with patient overall survival across different cancer types 3) meQTLs in GWAS linkage disequilibrium (LD) regions. |
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| Tag - Target: | Genome/Gene, Genetic variation, Epigenetics, Health/Disease |
| Tag - Information type: | Sequence, Phenotype, Expression |
| Reference(s) - PubMed ID/DOI: | PubMed ID: DOI: |
| Language(s): | English |
| Operational status: | Active |
| Link(s) to Downloadable data: | http://bioinfo.life.hust.edu.cn/Pancan-meQTL/download |
| Link(s) to Metadata of downloadable data: | - |
| Link(s) to Terms of use: | - |
| Link(s) to "How to use": | - |
| Contact information of database: | http://bioinfo.life.hust.edu.cn/Pancan-meQTL/contact |
| Link(s) to API / SPARQL endpoint | - |
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Link to MEDALS Database list:
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Link to FAIRsharing:
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Similar databases:
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EWAS Atlas iMETHYL QTLbase ncRNA-eQTL SNP2APA CancerSplicingQTL Cell Model Passports HaploReg DBKERO MIAMI |
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Record maintainer
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Integbio Database Catalog |
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Record source:
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Date of creation of this record:
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2020-01-21 |
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Last update date of this record:
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2020-01-21 |
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Record license:
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Creative Commons CC0 license |