OncoBase
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| Alternative name: | - |
| URL: | |
| Database maintenance site: | Peking University Cancer Hospital and Institute, Chinese Academy of Sciences, University of Michigan |
| Country/Region: | China, United States |
| Database description: | OncoBase is an integrated database for annotating somatic mutations from more than 120 cancer projects. Data are collected from TCGA, ICGC, COSMIC and ClinVar. It provides comprehensive annotation and prediction of regulatory somatic mutations. Each entry includes information about Mutation_Target_Pair, BioCircos_View, Regulatory_Elements, Regulatory_Network, TF_Binding, Motif_Break, Quantitative_Trait_Locus, Expression, and Co-Expression, etc. |
| Organism(s) covered: | |
| Tag - Target: | Genome/Gene, Genetic variation, Cell/Organelle, Health/Disease |
| Tag - Information type: | Sequence, Expression, Interaction/Pathway |
| Reference(s) - PubMed ID/DOI: | PubMed ID: DOI: |
| Language(s): | English |
| Operational status: | Active |
| Link(s) to Downloadable data: | http://159.226.67.237/sun/oncobase/welcome/download.html |
| Link(s) to Metadata of downloadable data: | - |
| Link(s) to Terms of use: | - |
| Link(s) to "How to use": | http://159.226.67.237/sun/oncobase/welcome/documentation.html |
| Contact information of database: | http://159.226.67.237/sun/oncobase/welcome/contact.html |
| Link(s) to API / SPARQL endpoint | - |
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Link to LSDB Archive:
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Link to MEDALS Database list:
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Link to TogoTV:
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Link to FAIRsharing:
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Similar databases:
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HACER neXtProt Stem Cell Commons HaploReg LncBook Nuclear Receptor Signaling Atlas ReMap Autism Knowledgebase CancerResource HmtVar |
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Record maintainer
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Integbio Database Catalog |
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Record source:
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Date of creation of this record:
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2019-11-19 |
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Last update date of this record:
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2019-11-19 |
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Record license:
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Creative Commons CC0 license |