NLDB: Natural Ligand DataBase
 ID: | |
| Database name: | |
| Alternative name: | |
| URL: | |
| Database maintenance site: | Tohoku University Graduate School of Information Sciences (Link to J-Global) |
| Country/Region: | Japan |
| Database description: | NLDB is a database of automatically collected and predicted 3D protein-ligand interactions in the enzymatic reactions of metabolic pathways registered in KEGG. NLDB provides three different types of data resources; the natural complexes are experimentally determined protein-ligand complex structures in PDB, the analog complexes are predicted based on known protein structures in a complex with a similar ligand, and the ab initio complexes are predicted by docking simulations. The database has a flexible search function based on various types of keywords, and an enrichment analysis function based on a set of KEGG compound IDs. In addition, NLDB shows the known polymorphisms found in human genome on protein structures. |
| Organism(s) covered: | - |
| Tag - Target: | Protein, Metabolite, Chemical compound |
| Tag - Information type: | 3D structure, Interaction/Pathway |
| Reference(s) - PubMed ID/DOI: | PubMed ID: DOI: |
| Language(s): | English |
| Operational status: | Active |
| Link(s) to Downloadable data: | http://nldb.hgc.jp/nldb/download |
| Link(s) to Metadata of downloadable data: | - |
| Link(s) to Terms of use: | - |
| Link(s) to "How to use": | - |
| Contact information of database: | - |
| Link(s) to API / SPARQL endpoint | - |
|
Link to LSDB Archive:
|
- |
|
Link to MEDALS Database list:
|
- |
|
Link to TogoTV:
|
- |
|
Link to FAIRsharing:
|
- |
|
Similar databases:
|
iPfam Protein-Chemical Structural Interactions Protein-ligand affinity change upon mutation PSCDB FMODB STING 3DMET LigandBox Ligand Expo Protein Protein Interaction Inhibition Database |
|
Record maintainer
|
Integbio Database Catalog |
|
Record source:
|
|
|
Date of creation of this record:
|
2019-07-02 |
|
Last update date of this record:
|
2019-07-02 |
|
Record license:
|
Creative Commons CC0 license |