NGSmethDB
 ID: | |
| Database name: | |
| Alternative name: | - |
| URL: | |
| Database maintenance site: | Computational Epigenomics Lab, Evolutionary Genomics and Bioinformatics Group, Dept. of Genetics, Inst. of Biotechnology, University of Granada |
| Country/Region: | Spain |
| Database description: | NGSmethDB is a database for whole genome methylomes generated from short-read data sets obtained by bisulfite sequencing (WGBS) technology. Publicly available short-read data sets, mainly from NCBI GEO and the ROADMAP project, were used for the analysis by MethFlow that was an original pipeline for the integral analysis of bisulfite sequencing data. Selected data or dumps for entire methylomes can be downloaded on the web. Programmatic access to the database is also available. |
| Organism(s) covered: | , , , , , |
| Tag - Target: | Genome/Gene, Epigenetics |
| Tag - Information type: | Sequence, Localization |
| Reference(s) - PubMed ID/DOI: | PubMed ID: DOI: PubMed ID: DOI: PubMed ID: DOI: |
| Language(s): | English |
| Operational status: | Active |
| Link(s) to Downloadable data: | https://bioinfo2.ugr.es/NGSmethDB/data-access/ |
| Link(s) to Metadata of downloadable data: | - |
| Link(s) to Terms of use: | - |
| Link(s) to "How to use": | - |
| Contact information of database: | - |
| Link(s) to API / SPARQL endpoint | - |
|
Link to LSDB Archive:
|
- |
|
Link to MEDALS Database list:
|
- |
|
Link to TogoTV:
|
- |
|
Link to FAIRsharing:
|
- |
|
Similar databases:
|
DeepBlue Epigenome project portal site Roadmap Epigenomics Project CEEHRC NETWORK IHEC Data Portal QTLbase MethylomeDB MIAMI Pancan-meQTL |
|
Record maintainer
|
Integbio Database Catalog |
|
Record source:
|
|
|
Date of creation of this record:
|
2018-10-08 |
|
Last update date of this record:
|
2019-04-25 |
|
Record license:
|
Creative Commons CC0 license |