ArchDB
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| Database name: | |
| Alternative name: | - |
| URL: | |
| Database maintenance site: | LMGM (Laboratoire de Microbiologie et Genetique Moleculaires), SBI (The Structural Bioinformatics Laboratory), bioinsilico.org |
| Country/Region: | Spain |
| Database description: | ArchDB is a compilation of structural classifications of loops extracted from known protein structures. The structural classification is based on the geometry and conformation of the loop. The geometry is defined by four internal variables and the type of regular flanking secondary structures, resulting in 10 different loop types. Loops in ArchDB have been classified using an improved version (Espadaler et al.) of the original ArchType program published in 1997 by Oliva et al. |
| Organism(s) covered: | |
| Tag - Target: | Protein |
| Tag - Information type: | Classification, Sequence, 3D structure |
| Reference(s) - PubMed ID/DOI: | PubMed ID: DOI: PubMed ID: DOI: |
| Language(s): | English |
| Operational status: | Active |
| Link(s) to Downloadable data: | - |
| Link(s) to Metadata of downloadable data: | - |
| Link(s) to Terms of use: | - |
| Link(s) to "How to use": | - |
| Contact information of database: | - |
| Link(s) to API / SPARQL endpoint | - |
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Link to LSDB Archive:
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Link to MEDALS Database list:
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Link to TogoTV:
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- |
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Link to FAIRsharing:
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https://fairsharing.org/10.25504/FAIRsharing.tp9z4q |
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Similar databases:
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Sequence-Structural Templates of Single-member Superfamilies hGTOP MEROPS CATH SCOP2 CoDNaS UniLectin ProSeg ProtoNet RNA Characterization of Secondary Structure Motifs |
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Record maintainer
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See the corresponding part in the FAIRsharing record. |
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Record source:
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 (2018-12-21)
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Date of creation of this record:
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2019-03-28 |
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Last update date of this record:
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2019-05-19 |
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Record license:
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Creative Commons Attribution and Share-alike (CC-BY-SA) International 4.0 license |