PolymiRTS: Polymorphism in microRNA Target Site
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| Database maintenance site: | The University of Tennessee Health Science Center |
| Country/Region: | United States |
| Database description: | PolymiRTS is a database of DNA variations which occur naturally in predicted and experimentally identified microRNA (miRNA) target sites. It provides links between SNPs in miRNA target sites, cis-acting expression quantitative trait loci (eQTLs), and the results of genome-wide association studies (GWAS) of human diseases. Data are created by scanning 3'UTRs of mRNAs in human and mouse for SNPs in miRNA target sites, and identifying the potential downstream effects of these polymorphisms on gene expression and complex traits. This database also includes polymorphisms in target sites that have been supported by a variety of experimental methods and polymorphisms in miRNA seed regions. |
| Organism(s) covered: | , , |
| Tag - Target: | Genetic variation, RNA |
| Tag - Information type: | Sequence |
| Reference(s) - PubMed ID/DOI: | PubMed ID: DOI: PubMed ID: DOI: |
| Language(s): | English |
| Operational status: | Active |
| Link(s) to Downloadable data: | - |
| Link(s) to Metadata of downloadable data: | - |
| Link(s) to Terms of use: | - |
| Link(s) to "How to use": | - |
| Contact information of database: | - |
| Link(s) to API / SPARQL endpoint | - |
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Link to LSDB Archive:
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Link to MEDALS Database list:
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Link to TogoTV:
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Link to FAIRsharing:
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https://fairsharing.org/biodbcore-000089 |
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Similar databases:
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PmiRKB miRNEST miRBase miRTarBase EVmiRNA LncBook The ribosomal RNA operon copy number database VISDB Integrated Genomic Database of Non-Small Cell Lung Cancer Project Specific Custom Tracks - ncRNA.org |
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Record maintainer
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Integbio Database Catalog |
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Record source:
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Date of creation of this record:
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2013-06-17 |
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Last update date of this record:
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2013-06-17 |
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Record license:
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Creative Commons CC0 license |