ProMode-Elastic
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| Alternative name: | - |
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| Database maintenance site: | Waseda University (Link to J-Global) |
| Country/Region: | Japan |
| Database description: | ProMode-Elastic is a database of normal mode analysis of PDB data using elastic network model in torsional angle space. Normal mode analysis are performed by unique developed program, PDBETA. It provides the following information; 1) Fluctuation of atoms and Fluctuation of dihedral angles. Time average and data for the 3 lowest-frequency normal modes are given by graphs. 2) Correlation between fluctuating atoms. Time average and data for the 10 lowest-frequency normal modes are given by a triangle map. Furthermore, a distance map between residues are given by a triangle map. 3) Animation of fluctuating molecules displayed on the viewers, jV (PDBj) and Jmol, for the 10 lowest-frequency normal modes. GIF animation is also available. 4) Displacement vectors exhibited on the viewers, jV (PDBj) and Jmol, for the 10 lowest-frequency normal modes. Moreover, static images for displacement vectors are presented. In this database, some numerical data are downloadable. |
| Organism(s) covered: | - |
| Tag - Target: | Protein |
| Tag - Information type: | 3D structure |
| Reference(s) - PubMed ID/DOI: | PubMed ID: DOI: |
| Language(s): | Japanese, English |
| Operational status: | Active |
| Link(s) to Downloadable data: | - |
| Link(s) to Metadata of downloadable data: | - |
| Link(s) to Terms of use: | - |
| Link(s) to "How to use": | - |
| Contact information of database: | - |
| Link(s) to API / SPARQL endpoint | - |
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Link to LSDB Archive:
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Link to MEDALS Database list:
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Link to TogoTV:
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Link to FAIRsharing:
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Similar databases:
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DTA DATABASE Protein Globe eF-site ConfC (Archive) Sequence Navigator DASH Database for Protein-3000 Project SAHG (Archive) OLIGAMI Protein Quaternary Structure |
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Record maintainer
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Integbio Database Catalog |
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Record source:
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Date of creation of this record:
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2013-06-17 |
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Last update date of this record:
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2016-06-19 |
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Record license:
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Creative Commons CC0 license |