Inactive
(Over 14 days)
(Over 14 days)
GTOP: Genomes TO Protein structures and functions
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| Database maintenance site: | National Institute of Genetics (Link to J-Global) |
| Country/Region: | Japan |
| Database description: | GTOP is a integrated database of information on structures and functions of proteins identified by various genome projects. This database, which mainly uses sequence homology analyses, features information on 3D structure of proteins predicted by Reverse PSI-BLAST against PDB. Functional prediction is mainly performed by BLAST search against Swissprot. Results of analysis contains information on protein motifs, family classification, prediction of domains (transmembrane helix and coiled-coil) and repetitive sequences. |
| Organism(s) covered: | - |
| Tag - Target: | Protein |
| Tag - Information type: | Sequence, 3D structure |
| Reference(s) - PubMed ID/DOI: | PubMed ID: DOI: PubMed ID: DOI: |
| Language(s): | English |
| Operational status: | Inactive |
| Link(s) to Downloadable data: | ftp://spock.genes.nig.ac.jp/pub/gtop/ |
| Link(s) to Metadata of downloadable data: | http://spock.genes.nig.ac.jp/~genome/mas-doc.html |
| Link(s) to Terms of use: | - |
| Link(s) to "How to use": | - |
| Contact information of database: | - |
| Link(s) to API / SPARQL endpoint | - |
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Link to LSDB Archive:
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Link to MEDALS Database list:
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Link to TogoTV:
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Link to FAIRsharing:
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Similar databases:
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GTOP (Rice version) DB-SPIRE (Archive) MobiDB PDBSTR SAHG (Archive) RepeatsDB Sequence Navigator GPCRdb MIPModDB: A Central Resource for the Superfamily of Major Intrinsic Proteins InterEvol database |
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Record maintainer
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Integbio Database Catalog |
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Record source:
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Date of creation of this record:
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2013-06-17 |
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Last update date of this record:
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2018-12-05 |
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Record license:
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Creative Commons CC0 license |