AAindex: Amino acid indices, substitution matrices and pair-wise contact potentials
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| Database maintenance site: | Kyoto University Institute for Chemical Research Bioinformatics Center (Link to J-Global) |
| Country/Region: | Japan |
| Database description: | The AAindex database collects and organizes amino acid properties. Users can search from dozens of studies summarizing multiple biophysical parameters for three types of information: - AAindex1: Biophysical properties of individual amino acids. All indexed studies have been compared to other studies in the database and pairwise correlation coefficients between related studies are provided. - AAindex2: Substitution indices indicating amino acid similarity. - AAindex3: Pairwise contact potentials between amino acids in various contexts. All three databases can be searched either by study or keyword using DBGET. |
| Organism(s) covered: | - |
| Tag - Target: | Protein |
| Tag - Information type: | Sequence |
| Reference(s) - PubMed ID/DOI: | PubMed ID: DOI: PubMed ID: DOI: PubMed ID: DOI: PubMed ID: DOI: PubMed ID: DOI: |
| Language(s): | English |
| Operational status: | Active |
| Link(s) to Downloadable data: | ftp://ftp.genome.jp/pub/db/community/aaindex/ |
| Link(s) to Metadata of downloadable data: | http://www.genome.jp/aaindex/aaindex_help.html, ftp://ftp.genome.jp/pub/db/community/aaindex/aaindex.doc |
| Link(s) to Terms of use: | - |
| Link(s) to "How to use": | - |
| Contact information of database: | - |
| Link(s) to API / SPARQL endpoint | - |
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Link to LSDB Archive:
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Link to MEDALS Database list:
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Link to TogoTV:
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Link to FAIRsharing:
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Similar databases:
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TMFunction (Archive) PMD IPI Termini-Oriented Protein Function INferred Database CASA db H-EPD InBase OWL PepBase PeptideAtlas |
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Record maintainer
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Integbio Database Catalog |
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Record source:
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Date of creation of this record:
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2013-06-17 |
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Last update date of this record:
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2013-06-17 |
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Record license:
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Creative Commons CC0 license |